Basic Information

Insect: Aphaenogaster picea
Gene Symbol: Rfx2
Assembly: GCA_003063865.1
Location: NJRM01000133.1:443819-451632[+]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.8e-37 2.2e-33 115.1 0.1 2 78 352 428 351 429 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.8e-37	2.2e-33	115.1	0.1	2	78	352	428	351	429	0.97

Sequence Information

Coding Sequence: ATGCGCCACACCTGCGAGGAAAATTCGTCTCTCCAGCAGCGGAGAGGTAGTAGCGGTGGTGGCGACTCAGTGGGTGCAGAGAGAGGCGAAGGAGTGATTGCCATGACTACGACAGGAGCCCAGTATGCCCTCGCAGCAGCATCCACCGGGGCTAATAACAGTGGGGGTAGCTCCACGGCAGTAGGGGTGGAATCTAAGCAAAATGTGGTTGTCGTGACTACTACTTCCAGTTCCAGTGGCGGTGGTAGCGGAGCACAGACTCAGTCTGCCAGAGGCCAGCAACTTATCACCGTCGTGACGAATCCTGATCCTTCCAGTCCAAATAATTTGCAACCCATTCAGttattGGTTCAGGATCCACTTGAAACAGCTGCAGATTCGTCCAACGGCTCAACAGGTACGCCAGCGCATGTTACAGCACAGGTAGTGGTCAATACTACTCACTCAGGCCAGCACACGCTAGTGGATTCTGACGCTGCTTCTACGTCAGCTGGCACCATCGTCAGTGGTTCCCCGCACTACATAACAGTCACAGGCACCAGTGATTCATCACCCTACGCGTCCCTCACAACGGCTGTAGTGTCCGGTGACGCAGAGGCAGTGGGGTCCGAGTCAGTTTCTCATCCAACTTACGTTCAATATGTCGAAGGGGATGGTTCCACGTATATACCGGCGAATGGTCAGATGACATATCCTGTTTATGCTGTCGGCGAGGCAGGAGCAATGTACACTCCAGCTTCGGGTCAATACTATACTCCAGCAACAACGCCAGTAACATATGCACAGGTCACAGGACAAGGCACGAATTCGACCACCGGACAACTGTTATCACAGGGCAACGGCACGTACTTGATTCAACAGAGCGTAGTGGATGGAGACCCGACTCATGCGCTCATATCCGCAGCTGCCGCACGCACCAGCCCGCAAACGGAAACAGCGGAGGCTGTGATTAGCGGTGGTGGCGGGGCGTACTTGATCAGCGGTAATTCTGGAGGTACCACTGTCACCGTGGAAGAGACAGCGGCAAACGTGACGCATGCCACTAGAGTGTCCCAGGCCACCGTAAACTGGTTGTTGGAGAATTATGAAACTGCCGACGGCGTATCCCTTCCAAGATCAACTCTCTACAATCATTACCTACGCCATTGCTCCGAAAATAAATTGGATCCTGTGAACGCAGCCAGTTTCGGGAAATTAATACGTTCTGTATTCTTGGGATTGAGAACTAGGCGTTTAGGGACTAGGGGAAACTCGAAATATCATTATTACGGAATTCGTGTGAAACCAAGCTCCCCGCTATCTATCTTGAATGAAGATGGCACATCGAGACAACAGCAGAGCGCGAACTCACAGACTAAGCGATTCAAATTTGTCAATCAAAAGCAGGATTCGTCCTACGACAATAACGCGCACACGAACACGAATATCTCTACCAATTCTTCGCCGCCACAGTATCACCAATACCTCGGCGAAGCGAGCGGCGCCATTCCCGATTTTCCGGAGATCTTTATCAGTCATGACTCGTCTCTGCCCGAAGATTGCACCCTCGAAGACATCGATACGTTCCGCAGCATATACAGAGAACATTGCGAAGCGTTCTTGGACGCGGTGCTGAATTTCGAATTCGCCACGGTGGAGAGCCTTTGGAGAGAATTCTGGCGCAGCCAGGACAATAATAACGGTGATGAGTGCGAAGAGGAGAAATACTTGTCAAAAACCAAATTATATCAGATGTGTCAGTGTACAGGAGTACAAGACTTTATCAAAAAAGTGGACTATACATTCTATCAGAATCTAGTCGATGTTTTAATGCCTAATGTATTGCGACCGATACCAAGTTCATTGACACAGTCTATCCGAAATTTTGCAAAGGGATTGGAATCTTGGTTACAGTCAGCAATGGCCGATTGTCCCGAAGAAATGACGCAAATTaagTTAACTGCAGTGTCAGCTTTTGCTCAAACTTTAAGGCGCTATACGTCATTAAATCATCTTGCACAAGCCGCGCGAGCGGTGCTTCAAAATTCTAGTCAAATTAATCAAATGTTAGCTGACTTGAATCGCGTTGACTTTCACAACGTGCAAGAACAAGCATCCTGGGTATGCCAATGTGATTACGGGATGGTACAACGTCTCGAGGCGGATTTTAAGGTAACGTTACAGCAACAAAATTCACTAGAAGATTGGGCGATTTGGTTGAAAGGAGTCGTGACTCAAGCGCTCAAACCACATGAGGAGAAGCCAACATTTGCTAAAGCTGCACGTCAATTCTTGCTCAAGTGGTCATTTTATAGCTCGATGGTTATCCGGGATCTCACTTTGAGGAGTGCTGCGAGTTTCGGATCTTTTCATCTTATCAGATTACTTTATGACGAgtacatgttttatttaatagagCACCAAGTCGCCATCGCAACTGGAACTACGCCAATAGCTGTAATGGGAGATaaaagtcaaaattgcTCTTTAGTTAGTAGCTTTGGAGCAACGTCCAATGGAGATGCATCTAATGCAAGCCAACAAAAACGTATGAAGCTAAGCTAA
Protein Sequence: MRHTCEENSSLQQRRGSSGGGDSVGAERGEGVIAMTTTGAQYALAAASTGANNSGGSSTAVGVESKQNVVVVTTTSSSSGGGSGAQTQSARGQQLITVVTNPDPSSPNNLQPIQLLVQDPLETAADSSNGSTGTPAHVTAQVVVNTTHSGQHTLVDSDAASTSAGTIVSGSPHYITVTGTSDSSPYASLTTAVVSGDAEAVGSESVSHPTYVQYVEGDGSTYIPANGQMTYPVYAVGEAGAMYTPASGQYYTPATTPVTYAQVTGQGTNSTTGQLLSQGNGTYLIQQSVVDGDPTHALISAAAARTSPQTETAEAVISGGGGAYLISGNSGGTTVTVEETAANVTHATRVSQATVNWLLENYETADGVSLPRSTLYNHYLRHCSENKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPSSPLSILNEDGTSRQQQSANSQTKRFKFVNQKQDSSYDNNAHTNTNISTNSSPPQYHQYLGEASGAIPDFPEIFISHDSSLPEDCTLEDIDTFRSIYREHCEAFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCQCTGVQDFIKKVDYTFYQNLVDVLMPNVLRPIPSSLTQSIRNFAKGLESWLQSAMADCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQASWVCQCDYGMVQRLEADFKVTLQQQNSLEDWAIWLKGVVTQALKPHEEKPTFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMGDKSQNCSLVSSFGATSNGDASNASQQKRMKLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00254817;
90% Identity: iTF_00014473;
80% Identity: iTF_00126442; iTF_00125652; iTF_00129468;