Wpum011363.1
Basic Information
- Insect
- Wiebesia pumilae
- Gene Symbol
- Rfx2
- Assembly
- GCA_018907045.1
- Location
- JACCHZ010000138.1:11307078-11315349[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-37 3.2e-33 115.7 0.0 2 78 379 455 378 456 0.97
Sequence Information
- Coding Sequence
- ATGAATCATCTTGGGGTAGGTAAGCATAACATGTATCGGCAATCGAACCCACTCTCTTTCGAGCACAATGGTGGAGGGTGGAATCTCAGGTGGTTGGCAGTTTCACCTAGAAATAAATCTAAGCAGAGAGGACGAAGTGGCGGTGATACTTCTTGCACAGAGAGAGGTGAGGGAGTTATTGCCATGACTACAACAGGAGCCCAGTATGCTCTCGCAGCATCCACCGGGGCTGCCAACGGCGGGGGCAACTCTACAGTGGGGGTTGAAAGCAAGCCTAGTGTCGTCGTTGTTACCACATCTAATTCCAACGGTAGTGGTAATGCTGCCCAGTCACAGTCTAGCCGAGGACAACAGTTGATCACAGTAGTTACTAGTGGTGATCCATCGAGCCCCAATAGTTTACAGCCTATTCAACTATTGGTTCAAGATTCACTGGATGCAGCTGCTGATTCGTCAAATGGATCGTCGGGCACACAGGCACATGTAACAGCACAAGTGGTTGTTAATACAACGCATTCTGGTCAACACACTCTTGTAGACTCTGATTCCGTATCAACATCCACTGGTACAATTGTCAGCAGCTCGCCACACTATATTACTGTAACAGGCACCAGTGATTCACCATCATACGCCTCCCTCACAACAGCTGTAGTGCCTGGAGACGCAGACGCCGTGGGGTCCGAATCGGTTACCCATCCCACTTATGTTCAATACGTCGAAGGCGATGGATCTACGTATATACCGACAAATGGACAGATGACATATCCCGTGTATGCAGTTGGTGAGGCGGGAACAATGTACACTCCCGCCTCCAACCAGTATTACACTTCAACTTCCACGCCAGTAACGTACGCCCAAGTCACTGGCTCGAGTACAACTACAGGGCAACTTTTGTCACAAGGCACTGGAACCTACCTAATCCAGCAGAGCGTCGTAGATGGAGATCCAACGACGCACGCTCTCATATCAGCCGCCGCTGCGGCACGCACAAGCCCTCAAACCGAAAGTGCCGAAGCTGTTGTTAGCGGGGGTGGAGGGGCATACTTGATCAGCGGCAACTCGACGAGTGCTCCTGTCAGCGTGGAAGACGCAGCAACCGCCGCGGCGAATATGACGCATGCAACTAGGGTCTCCCAGGCCACCGTGCAATGGTTATTGGAAAATTACGAGACAGCTGATGGAGTTTCACTTCCCAGATCAACATTATACAATCATTACCTTCGTCACTGTTCCGATAATAAATTAGATCCTGTAAATGCAGCTAGTTTTGGAAAACTCATTAGATCTGTGTTTTTGGGCCTACGCACACGACGTCTTGGAACTCGAGGGAACTCGAAGTACCATTATTACGGCATCCGAGTGAAGCCGAGCTCTCCCCTCGTGATGCTGAACGAGGACGGCACGTCACGGCAACAACCCACGTCGAATTCCCAAGCCAACAAGCGCATAAAGTTTGTGAACCAGAAGCAGTCGGAAACGTCGTACGAGACAAACACCCAGGTGAACAGCACGAGTATATCTTCTAACGCCTCGTCGCCACAGTACCACCAGTATTTGGGTGAGGCAAGCTGCGCCATACCCGAGTTTCCGGAGATCATGGTAGGCCACGGCTCAAGTCTGCCCGAGGACTGTACCCTAGAAGACATCGACACCTTCCGCAGCATATACAGAGAGCACTGCGAGGCATTCCTCGACGCGGTCCTCAATTTCGAATTCACCACCGTCGAGAGCCTATGGCGTGAATTCTGGCGTAGCCAGGACAACAATAACGGCGACGAGTGCGAAGAGGAGAAGTATTTATCAAAGACTAAGCTTTATCAAATGTGCAAGTGCATAGAAGTACAGGATTTTATCAGAAGAGTCGATTATACGTTTTATCAGAATCTTGTAGAAGTATTAATGCCTGACGTTCTAAGGCCTATACCAAGCCCTTTAACGCAATCTATTAGAAATTTCGCCAAAGGTTTAGAGTCTTGGTTAACTTCAGCTATGAACGATTGTCCCGAAGAAATGATGCAGATTAAGTTGACGGCGGTATCGGCATTCGCTCAAACTCTCAGAAGATATACATCTTTAAATCACTTAGCTCAGGCAGCAAGAGCTGTGCTTCAAAACAATAGTCAAATTAACCAAATGCTGGCAGATTTAAATCGGGTCGACTTTCATAACGTACAGGAGCAGGCTTCTTGGGTTTGTCAATGTGATTATGCTGTTGTGCAACGCTTGGAGGCAGATTTCAAAGTAACTTTACAGCAGCAAAACTCATTGGAACAATGGGCCGTGTGGTTAAAAGGTGTTGTAACGCAAGTACTTCAGCCTTATGAAGGCAAACCTACTTTTGCCAAAGCAGCAAGACAGTTCCTGCTCAAGTGGTCTTTTTATAGTTCAATGGTTATAAGGGATTTGACTTTGAGAAGTGCCGCTAGTTTTGGATCTTTTCACCTTATCCGTTTACTTTACGATGAATATATGTTCTATTTGATCGAGCACCAGGTAGCCATTTCTACGGGTACAACACCAATAGCCGTAATGGGAGATAAGAGTCAAAACTGTTCTATGATTAATATTTTTGGATCCAATGGAGATGTGTCAAGCATTTGTCCAACAAAACGAGTAAAATTGAGCTAA
- Protein Sequence
- MNHLGVGKHNMYRQSNPLSFEHNGGGWNLRWLAVSPRNKSKQRGRSGGDTSCTERGEGVIAMTTTGAQYALAASTGAANGGGNSTVGVESKPSVVVVTTSNSNGSGNAAQSQSSRGQQLITVVTSGDPSSPNSLQPIQLLVQDSLDAAADSSNGSSGTQAHVTAQVVVNTTHSGQHTLVDSDSVSTSTGTIVSSSPHYITVTGTSDSPSYASLTTAVVPGDADAVGSESVTHPTYVQYVEGDGSTYIPTNGQMTYPVYAVGEAGTMYTPASNQYYTSTSTPVTYAQVTGSSTTTGQLLSQGTGTYLIQQSVVDGDPTTHALISAAAAARTSPQTESAEAVVSGGGGAYLISGNSTSAPVSVEDAATAAANMTHATRVSQATVQWLLENYETADGVSLPRSTLYNHYLRHCSDNKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPSSPLVMLNEDGTSRQQPTSNSQANKRIKFVNQKQSETSYETNTQVNSTSISSNASSPQYHQYLGEASCAIPEFPEIMVGHGSSLPEDCTLEDIDTFRSIYREHCEAFLDAVLNFEFTTVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCKCIEVQDFIRRVDYTFYQNLVEVLMPDVLRPIPSPLTQSIRNFAKGLESWLTSAMNDCPEEMMQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNNSQINQMLADLNRVDFHNVQEQASWVCQCDYAVVQRLEADFKVTLQQQNSLEQWAVWLKGVVTQVLQPYEGKPTFAKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAISTGTTPIAVMGDKSQNCSMINIFGSNGDVSSICPTKRVKLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00254817;
- 90% Identity
- iTF_00969313; iTF_00708323; iTF_00707582; iTF_00712586; iTF_01111498; iTF_01110662; iTF_01109849; iTF_01112321; iTF_00079551; iTF_01381066; iTF_01380354; iTF_00738814; iTF_01113165; iTF_00845041; iTF_00305397; iTF_00968534; iTF_01379754; iTF_00304830; iTF_01428023; iTF_00286072; iTF_00877592; iTF_00073461; iTF_01036764; iTF_00143617; iTF_01035946; iTF_01274219; iTF_01035183; iTF_01190064; iTF_01486867; iTF_00309248; iTF_00463748; iTF_01216531; iTF_01218815; iTF_00714112; iTF_00713433;
- 80% Identity
- -