Basic Information

Insect: Sussaba pulchella
Gene Symbol: Rfx2
Assembly: GCA_963971145.1
Location: OZ020166.1:15593701-15602794[-]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.7e-37 1.3e-33 115.8 0.0 2 78 321 397 320 398 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.7e-37	1.3e-33	115.8	0.0	2	78	321	397	320	398	0.97

Sequence Information

Coding Sequence: ATGACTACGACCGGAGCCCAGTACGCCCTTGCAGCATCCGCCGGGGCTGGCAATGGCGGGGGTAGCTCCGTTCAAGTGGGGGTGGACTCTAAACCCAGCATAGTTGTTGTGACCACATCCAGCAACGGAGGTGGCGGCAACGCGCCACAGACTCAGTCTACGAGAGGTCAACAACTGATTACAGTGGTCGCAGGCCCTGATCCTTCTAGTCCGAACAATCTTCAACCCATTCAGtTATTGGTCCAAGATCCATTGGAAACAGCGGCTGATTCATCGAACGGTTCGTCGAGCACACCGCAACACGTTACAGCTCAGGTGGTCGTGAATACGACGCATCCTACGGGACAGCACACCCTCGTTGATTCGGACTCTGCCTCGACGTCGGCCGGAACGATCGTCAGTGGCTCCCCGCATTATATCACAGTCACAGGCACCGACGATTCGCCGTCCTACACGTCTCTAACAACGGCCGTAGtgtccGGTGACGGCGAGGCAGTGGGGTCCGAGTCGGTTTCCCATTCAACCTATGTCCAGTATGTCGAGGGGGATGGCTCAACGTACAATCTTACAAACGGACAGATGACATATCCGGTTTACGCTGTTGCCGGGGAGGCGGGAGCCATGTACACTCCCGCCTCCAGTCAGTATTACACCCCAGCATCTACACCGGTGACTTACGCACAGGTTTCCGGACAAGGTTCCAACACGACTACCGGTCAACTTCTTTCTCAAGGAAACGGGACGTATCTCATTCAGCAGAGCGTCGTCGATGGCGACCCGACGACTCACGCCCTCATATCCGCGGCTGCGGCTCGCGCCAGTCCCCAGACCGAAAGCGCCGAGGCTGTGGTTAGCGGGGGTGGAGGGGCGTACTTGATCAGCGGTAATGCGGGAGGCGCTTCTATCAGCGTGGAGGAAGCTGCATCGGCGGCGAACATGACGCATGCCACTAGGGTCTCCCAGGCCACCGTGCAATGGCTTCTCGAGAATTACGAAACCGCGGACGGTGTGTCGCTGCCACGTTCGACTCTCTACAATCATTATTTGCGACACTGTTCGGACAACAAATTGGATCCGGTCAACGCGGCGAGTTTCGGCAAGCTCATACGTTCGGTTTTTCTCGGTTTGCGAACCAGAAGACTCGGAACTCGaggcAACTCtaaatatcattattacgGAATTCGGGTGAAACCAAGTTCGCCATTGATAATGCTCAACGAGGACGGTACATCGAGACAGCAACAAACCACGAATTCTCAGACTAAACGTTTCAAATTCGTAAATCAAAAGCAAGAATCGACGTACGAAAACAACGCGCAAACGAACGCGAACGTAACGACGAACGCGACGTCGCCGCAGTATCATCAGTATTTGGGCGAGGCGAGCGGTGCCATACCGGAATTTCCGGAAATCGTCGTTGGTCACGGATCCTCCTTGCCCGAGGATTGCACCCTCGAGGACATCGACACGTTTCGAAGCATTTATCGCGAACATTGCGAAGCTTTTTTGGACGCCGTATTGAACTTCGAATTCGGCACGGTCGAAAGTTTGTGGAGAGAATTTTGGCGCAGTCAGGACAACAACAACGGCGACGAgtgcgaggaagaaaaatatttgtccaAaACGAAACTCTATCAAATGTGCAAATGCGGCGAAGTCCAGGATTTTATCAGAACGGTGGATTATACGTTCTATCAGAATCTCGTCGAAGTTTTGATGCCGGATGTGCTACGACCTATACCAAGTTCGTTGACACAGTCGATAAGAAATTTCGCGAAAGGCCTCGAATCGTGGTTGTCCGCGGCGATGAACGATTGTCCCGAGGAAATGATGCAAATAAAGctCACCGCCGTATCGGCCTTCGCTCAAACGCTGCGACGTTACACGTCGCTGAATCATCTGGCTCAAGCTGCCCGAGCTGTGCTGCAGAATTCTAGTCAAATTAATCAAATGCTCGCCGATCTGAATCGCGTGGATTTTCACAACGTACAAGAACagGCTTCTTGGGTCTGTCAATGCGATTACACGATGGTGCAACGTCTCGAGGCCGACTTCAAACTTACGCTTCAGCAACAAAATTCGCTGGAACAATGGGCTGTATGGCTCAAGGGCGTTGTAACTCAAGTTCTCAAGCCTTACGAAGGAAAACCGACTTTCGTCAAAGCCGCTAGACAATTTTTGCTCAAGTGGTCGTTCTACAGTTCGATGGTCATTCGAGATCTGACACTTCGAAGCGCAGCCAGTTTCGGTTCTTTTCACTTAATTCGATTACTATACGACGAGTACATGTTTTATCTGATCGAGCATCAGGTCGCGATAGCGACTGGCACGACGCCGATAGCCGTCATGGGAGATAAGAATCAGACCTGTACGATGATGAATACCTTCGGGGTAACGTCGAACGGAGACTCAGCGAATCCTAATCAACCGAAACGCATGAAGCTGAGCTAA
Protein Sequence: MTTTGAQYALAASAGAGNGGGSSVQVGVDSKPSIVVVTTSSNGGGGNAPQTQSTRGQQLITVVAGPDPSSPNNLQPIQLLVQDPLETAADSSNGSSSTPQHVTAQVVVNTTHPTGQHTLVDSDSASTSAGTIVSGSPHYITVTGTDDSPSYTSLTTAVVSGDGEAVGSESVSHSTYVQYVEGDGSTYNLTNGQMTYPVYAVAGEAGAMYTPASSQYYTPASTPVTYAQVSGQGSNTTTGQLLSQGNGTYLIQQSVVDGDPTTHALISAAAARASPQTESAEAVVSGGGGAYLISGNAGGASISVEEAASAANMTHATRVSQATVQWLLENYETADGVSLPRSTLYNHYLRHCSDNKLDPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRVKPSSPLIMLNEDGTSRQQQTTNSQTKRFKFVNQKQESTYENNAQTNANVTTNATSPQYHQYLGEASGAIPEFPEIVVGHGSSLPEDCTLEDIDTFRSIYREHCEAFLDAVLNFEFGTVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQMCKCGEVQDFIRTVDYTFYQNLVEVLMPDVLRPIPSSLTQSIRNFAKGLESWLSAAMNDCPEEMMQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQASWVCQCDYTMVQRLEADFKLTLQQQNSLEQWAVWLKGVVTQVLKPYEGKPTFVKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMGDKNQTCTMMNTFGVTSNGDSANPNQPKRMKLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00254817;
90% Identity: iTF_00905157; iTF_01207087; iTF_01364369; iTF_00059186; iTF_00058420; iTF_00414036; iTF_00459481; iTF_00057662; iTF_00720990; iTF_00652418; iTF_00342885; iTF_01497122; iTF_00828516; iTF_00829221; iTF_00439202; iTF_01100324; iTF_01101801; iTF_01306130; iTF_01102517; iTF_01103286; iTF_00628845; iTF_00798317; iTF_01056530; iTF_01055709; iTF_01057374; iTF_00050550; iTF_01129079; iTF_00263100; iTF_00262402; iTF_00265410; iTF_00266193; iTF_01298897; iTF_01508604;
80% Identity: -