Bhae002196.1
Basic Information
- Insect
- Bombus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_014825975.1
- Location
- CM026167.1:4219773-4222884[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-12 6.1e-09 35.5 0.0 2 35 41 75 40 83 0.89
Sequence Information
- Coding Sequence
- ATGGCTTCAGGTTTTTCAGCCAAGTTGTTGGAGTCGTCCCACGCTTGGCTCGGAGCCTCCACGTCCAGTATAGCAGCTGACTATTCCACCCTGCTGAAGCTGAAGGCGCCCACGTGGACGCGGCACGATCTCCAGGAAGCGATCGAGGCTGTGGTTACTCAGAAGATGCGCTTCACCCAGGCGTCCACGAAATACGGAATACCGAAAGGCACATTGTACGACAACATCCTGGGAAAGACGAAGAGAATGATGGTCCTGGAGGAAGCGGGTCTGAACTCGAGCGAGGAAACGGCCGTGCTCGAATTCTGCTGCGACATCAGCGTCAGTCCGTACAATCGTCGGACGAAAAAGTCGCTGAACGCGATCCTCAACTTCGTGGAAAAGCTGAGGCGAAAACGCGACCCTAACTTTGTGTTTAACGGTCTCTCTGGTTTCCGTTGGTGGTGGGCTTTCTGTAAAAAGCACTCGATAGTATCGCTTTACTTCAACGACGAGAACGAAAACGATAGTCAGTAA
- Protein Sequence
- MASGFSAKLLESSHAWLGASTSSIAADYSTLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKTKRMMVLEEAGLNSSEETAVLEFCCDISVSPYNRRTKKSLNAILNFVEKLRRKRDPNFVFNGLSGFRWWWAFCKKHSIVSLYFNDENENDSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00866628; iTF_00214945; iTF_00719329; iTF_01389345; iTF_01418273; iTF_00216994; iTF_00218338; iTF_00254242; iTF_00223107; iTF_00718467; iTF_00829412; iTF_01539524; iTF_01255461; iTF_00225158; iTF_00231238; iTF_00302950; iTF_00861798; iTF_00217671; iTF_00293639; iTF_00360135; iTF_01395047; iTF_01420199; iTF_00183208; iTF_00690088; iTF_01475368; iTF_01110857; iTF_01414089; iTF_00225834; iTF_00762474; iTF_01419562; iTF_00222443; iTF_00253483; iTF_01130733; iTF_01453998; iTF_01512110; iTF_00391215; iTF_01473839; iTF_00060112; iTF_00633552; iTF_00393521; iTF_00684721; iTF_00223794; iTF_01102707; iTF_01513395; iTF_00226516; iTF_00296692; iTF_00298228; iTF_00763156; iTF_01112500; iTF_00216309; iTF_01466101; iTF_00251990; iTF_01420856; iTF_00079769; iTF_00219033; iTF_00295929; iTF_00168314; iTF_00224475; iTF_00229275; iTF_00295163; iTF_01057563; iTF_00292860; iTF_00227197; iTF_00297469; iTF_01089917; iTF_00252734; iTF_01111678; iTF_00291455; iTF_01068895; iTF_00221184; iTF_00073641; iTF_00877770; iTF_00159027; iTF_00676613; iTF_00938599; iTF_00368047; iTF_01411407; iTF_01412240; iTF_00708468; iTF_00326298; iTF_00939452; iTF_00982212; iTF_00024543; iTF_01234949; iTF_01233569; iTF_01234269; iTF_00085222; iTF_01254717; iTF_00881926; iTF_00880364; iTF_00675943; iTF_01207272; iTF_01101245; iTF_00131882; iTF_00691007; iTF_01473098; iTF_01474603; iTF_00255000; iTF_00227883; iTF_01065484; iTF_01068208; iTF_00961746; iTF_00963110; iTF_00687094; iTF_00086106; iTF_00084453; iTF_00140507; iTF_01421468; iTF_00229950; iTF_00233150; iTF_01492798; iTF_01493502; iTF_00733888; iTF_01422152; iTF_01423565; iTF_01422840;
- 90% Identity
- iTF_00961746;
- 80% Identity
- iTF_00684721;