Mann000190.1
Basic Information
- Insect
- Macrophya annulata
- Gene Symbol
- -
- Assembly
- GCA_963924015.1
- Location
- OZ001257.1:1683896-1689154[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2 6.2e+03 -2.3 0.1 30 42 13 26 12 28 0.76 2 2 1.9e-11 1.4e-08 34.9 0.0 2 35 69 103 68 109 0.91
Sequence Information
- Coding Sequence
- ATGGACTTAAACTCCACTAGTGCCACCATGCGTTCACAGTCGACGTTTAGTAGAAAGAGACCGCGCGTCAAGACAGATCGACAATATTGTTTGAACGACTTGGCCAAGTTGTTGGAATCATCCCACGCTTGGCTCGGTGCCTCCACCTCCAGTATAGCCGCTGACTATTCAACCCTGCTGAAGTTGAAGGCACCGACATGGACACGTCACGATCTTCAGGAGGCTATAGAGGCCGTTGTTACCCAGAAGATGCGGTTCACTCAGGCCTCAACAAAGTATGGAATCCCGAAGGGTACCCTCTACGACAACATCCTAGGAAAATCTAAACGAATGATGGTACTTGAAGAGGCCGGCCTTAACCCGAACGAGGAAACTGCcgttttggaattttgttgCGATATTAGTGTTAGCCCTTATAATAGAAGGACCAAAAAGTCCCTAAATGCTATTTTAACATTCGTTGAAAGACTCAGGAGAAAACGAGATCCGGGTTTTATGTTCACTGGATTAGCTGGGTTTAGATGGTGGTGGGCATTTTGCAAAAAGCATTCTATCGTCTCGCTTTATTTTAACGACGAGAACGAACACGAATGA
- Protein Sequence
- MDLNSTSATMRSQSTFSRKRPRVKTDRQYCLNDLAKLLESSHAWLGASTSSIAADYSTLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMVLEEAGLNPNEETAVLEFCCDISVSPYNRRTKKSLNAILTFVERLRRKRDPGFMFTGLAGFRWWWAFCKKHSIVSLYFNDENEHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00219718;
- 90% Identity
- iTF_01453998;
- 80% Identity
- iTF_01414089;