Tfem000492.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000007.1:238118-241334[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.7e-12 7.1e-09 35.4 0.0 2 35 36 70 35 77 0.91
Sequence Information
- Coding Sequence
- ATGGCCAAGTTGTTGGAATCCTCCCACGCTTGGCTCGGTGCCTCCACCTCCAGTATAGCAGCTGACTATACGACCCTGCTGAAGCTGAAGGCGCCCACGTGGACGCGACACGATCTTCAGGAGGCTATCGAGGCCGTGGTCACGCAGAAGATGCGCTTCACCCAGGCGTCGACCAAGTACGGGATACCGAAGGGCACCCTCTACGACAACATCCTCGGAAAGTCGAAGAGGATGATGGTACTGGAGGAGGCGGGCCTCAACACAACCGAGGAGACGGCCGTGCTCGAGTTCTGCTGCGACATCAGCGTCAGCCCGTACAATCGTCGCACCAAGAAGTCCTTGAACGCGATACTCAACTTCGTGGAGAAGATCAGGCGAAAGCGCGATCCCGGATTCGTGTTCACCGGCCTCTCCGGTTTCCGCTGGTGGTGGGCATTCTGCAAGAAGCACTCGATAGTCTCGTTGTACTTCAACGACGAGAACGAACACGAATGA
- Protein Sequence
- MAKLLESSHAWLGASTSSIAADYTTLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMVLEEAGLNTTEETAVLEFCCDISVSPYNRRTKKSLNAILNFVEKIRRKRDPGFVFTGLSGFRWWWAFCKKHSIVSLYFNDENEHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00219718;
- 90% Identity
- iTF_00652610; iTF_00263365; iTF_00840982; iTF_00905342; iTF_00881154; iTF_00881926; iTF_00880364; iTF_00011008; iTF_00050729; iTF_00279886; iTF_00868036; iTF_01411407; iTF_00719329; iTF_01200066; iTF_00718467; iTF_00060112; iTF_01406416; iTF_00938599; iTF_01412240; iTF_01392688; iTF_00676613; iTF_00159027; iTF_01057563; iTF_01537819; iTF_00343100; iTF_00939452; iTF_01414089; iTF_01089917;
- 80% Identity
- -