Hrub012352.1
Basic Information
- Insect
- Halictus rubicundus
- Gene Symbol
- -
- Assembly
- GCA_028454235.1
- Location
- CM052178.1:14819985-14822710[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-12 6e-09 35.4 0.0 2 35 49 83 48 91 0.89
Sequence Information
- Coding Sequence
- ATGATAAACGCCGCGACCGTGAAAAAATCGAACTTTTTCCAAGCCAAGTTGTTGGAGTCATCCCACGCTTGGCTCGGAGCCTCCACGTCGAGTATAGCAGTTGACTATACGACCCTGCTGAAGCTGAAGGCGCCCACGTGGACGCGGCACGATCTCCAGGAAGCGATCGAGGCCGTGGTCACTCAGAAGATGCGATTCACCCAGGCGTCGACCAAATACGGGATACCGAAAGGGACCCTGTACGACAACATCCTCGGGAAGACGAAGCGCATGATGGTCCTCGAGGAGGCGGGCCTGAACTCGAGCGAGGAGACCGCCGTGCTCGAGTTCTGCTGCGACATCAGCGTCAGTCCGTACAACCGGCGCACCAAAAAGTCCCTGAACGCGATCCTCAACTTCGTCGAGAAGCTCCGACGGAAGCGCGAGCCCGGATTCGTCTTCAACGGTCTGTCAGGGTTTCGGTGGTGGTGGGCCTTCTGTAAAAAACACTCGATAGTCTCGCTTTACTTCAACGACGAGAACGAGAACGACCAGTGA
- Protein Sequence
- MINAATVKKSNFFQAKLLESSHAWLGASTSSIAVDYTTLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKTKRMMVLEEAGLNSSEETAVLEFCCDISVSPYNRRTKKSLNAILNFVEKLRRKREPGFVFNGLSGFRWWWAFCKKHSIVSLYFNDENENDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00219718;
- 90% Identity
- iTF_00961746;
- 80% Identity
- iTF_00762474;