Psmy001587.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- -
- Assembly
- GCA_030142225.1
- Location
- JARQST010000090.1:457640-460348[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-11 1.7e-08 34.2 0.0 2 35 38 72 37 79 0.91
Sequence Information
- Coding Sequence
- ATGTTGAGGGCCAAGTTGTTGGAATCTTCTCACGCTTGGCTCGGAGCCTCCACCTCCAGTATAGCCGCTGACTATTCGAGCCTGCTGAAGCTGAAGGCGCCGACGTGGACGCGACACGATCTTAAGGAGGCGATCGAGGCTGTGGTCACGCAGAAGATGCGCTTCACGCAAGCATCGACTAAGTACGGCATCCCCAAAGGCACCCTCTACGACAACATACTCGGCAAGTCCAAAAGGATGATGGTCCTCGAGGAGGCTGCCCTCAACTCCAGCGAGGAGGCCTCGGTACTCGAGTTCTGCTGCGACATCAGCGTCAGTCCTTACAATCGTCGCACCAAGAAGTCTCTGAACGCGATACTGAACTTCGTCGAGAAGCTCAGGCGAAAACGCGATCCTGGCTTCGTCTTCACGGGACTCTCGGGTTTTCGATGGTGGTGGGCCTTCTGCAAGAAGCACTCCATAGTTTCCTTGTATTTTAACGACGAGAACGAAAACGAATGA
- Protein Sequence
- MLRAKLLESSHAWLGASTSSIAADYSSLLKLKAPTWTRHDLKEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMVLEEAALNSSEEASVLEFCCDISVSPYNRRTKKSLNAILNFVEKLRRKRDPGFVFTGLSGFRWWWAFCKKHSIVSLYFNDENENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00219718;
- 90% Identity
- iTF_00961746;
- 80% Identity
- iTF_00254242; iTF_00293639; iTF_00253483; iTF_00296692; iTF_01395047; iTF_01473098; iTF_01474603; iTF_01473839; iTF_01475368; iTF_00251990; iTF_00252734; iTF_00255000;