Cpra000146.1
Basic Information
- Insect
- Cryptocheilus praepositus
- Gene Symbol
- -
- Assembly
- GCA_033815515.1
- Location
- JAWWQZ010000001.1:3435610-3445785[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-12 1e-08 35.2 0.0 2 35 47 81 46 88 0.91
Sequence Information
- Coding Sequence
- ATGGTCCGAAGCGGGATGAGGAAAAGTGAGAGGAAGgcCAAGTTGTTGGAATCGTCCCACGCTTGGCTCGGTGCCTCCACCTCCAGTATAGCAGCTGACTATACGACCCTGCTGAAGCTGAAGGCGCCCACGTGGACGCGGCATGATCTACAGGAAGCGATCGAGGCGGTGGTCACGCAGAAGATGAGATTCACCCAGGCCTCGACAAAGTACGGAATACCGAAGGGCACCTTGTACGACAACATCCTCGGCAAATCGAAGAGGATGATGGTCCTCGAGGAGGCGGGCCTCAATTCGAACGAGGAAACGGCCGTGCTCGAATTCTGCTGCGACATCAGCGTCAGCCCGTACAATCGAAGAACGAAGAAGTCGCTCAATGCGATTCTGACGTTCGTCGAGAAGCTCAGGCGAAAGCGTGATCCAGGTTTCGTTTTCACCGGACTTTCGGGCTTTCGCTGGTGGTGGGCGTTTTGCAAGAAACACTCGATAGTGTCGCTCTATTTTAACGACGAGAACGAGAACGAATGA
- Protein Sequence
- MVRSGMRKSERKAKLLESSHAWLGASTSSIAADYTTLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMVLEEAGLNSNEETAVLEFCCDISVSPYNRRTKKSLNAILTFVEKLRRKRDPGFVFTGLSGFRWWWAFCKKHSIVSLYFNDENENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00219718;
- 90% Identity
- iTF_00961746;
- 80% Identity
- -