Timm026511.1
Basic Information
- Insect
- Tetramorium immigrans
- Gene Symbol
- -
- Assembly
- GCA_011636585.1
- Location
- VBVO01002242.1:3387-5067[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-12 1.4e-08 34.9 0.0 2 35 68 102 67 108 0.91
Sequence Information
- Coding Sequence
- ATGAAGGCCCCATCATTTCTCGTCGGCCACACGCGATCCCTCGCAGTCCCTGACGTTAAGTTCCTTCCTGCGCAATTGCGCGCGGCCCGCGAGCCGCCAGAAATCGACGCGAGACTGAGGCTGGACAGTCGAAAAGAAATCGCTGACTATTTTCTAGCTGACTATACGACCCTGCTGAAGCTGAAGGCGCCCACGTGGACGCGGCACGATCTCCAGGAGGCGATCGAGGCCGTGGTGACTCAGAAGATGCGCTTCACCCAGGCGTCAACCAAGTACGGCATCCCGAAGGGCACTCTCTACGACAACATCCTCGGCAAGTCCAAGAGGATGATGATCCTCGAGGAGACCGCCCTCGATCCAGGCGAGGAAACGGCGGTGCTCGAGTTCTGCTGCGACATCAGCGTCAGCCCGTATAATCGGCGCACGAAGAAGTCCCTGAATGCGATACTAAATTTCGTCGAGCACCTCAGGCGGAAGCACGACCCCAGCTTCATGTTCACCGGGCTGTCGGGCTTCCGCTGGTGGTGGGCCTTCTGCAAGAAGCACTCGATAGTCTCGCTCTACATCAATGATGAGAACGAGAACGGTGCCGATTCTTCTTAA
- Protein Sequence
- MKAPSFLVGHTRSLAVPDVKFLPAQLRAAREPPEIDARLRLDSRKEIADYFLADYTTLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMILEETALDPGEETAVLEFCCDISVSPYNRRTKKSLNAILNFVEHLRRKHDPSFMFTGLSGFRWWWAFCKKHSIVSLYINDENENGADSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00219718;
- 90% Identity
- iTF_01422840;
- 80% Identity
- iTF_01422840;