Fvar007457.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- -
- Assembly
- GCA_011392965.1
- Location
- WNWW01000457.1:86974-98137[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.55 5.6e+02 -0.4 0.0 15 35 33 53 30 56 0.77 2 2 3.9e-12 3.9e-09 35.3 0.0 2 35 61 95 60 103 0.89
Sequence Information
- Coding Sequence
- ATGCCCATCAAATTTGCCGTGGCGCGGTGCATTCTGCCGCGTGAAACTCCAGTCGGTCGACGGGAGCCTCGACGACGTCAACGACGGCGTCGCGTCGGTGGGGCGTCTGTGCAGCGTCTCTGCTACCACGGCGGAGCTGACTATTCGACCCTGCTGAAGCTGAAGGCGCCCACGTGGACGCGGCACGATCTCCAGGAGGCGATCGAGGCGGTGGTCACGCAGAAGATGCGCTTCACCCAGGCGTCGACGAAATACGGAATACCGAAAGGCACACTGTACGACAACATCCTGGGAAAGACGAAGAGAATGATGGTGCTGGAGGAAGCGGGGCTGAACTCGAGCGAGGAGACCGCCGTCCTCGAGTTCTGCTGCGACATCAGCGTCAGCCCGTACAACCGCCGTACGAAAAAGTCGCTGAACGCGATCCTCAACTTCGTGGAGAAACTCAGGCGGAAACGCGACCCGAGCTTTGTGTTTAACGGCCTATCCGGCTTCCGTTGGTGGTGGGCATTCTGTAAAAAGCACTCGATCGTGTCGCTCTACTTCAacgacgagaacgagaacgatcAGTAA
- Protein Sequence
- MPIKFAVARCILPRETPVGRREPRRRQRRRRVGGASVQRLCYHGGADYSTLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKTKRMMVLEEAGLNSSEETAVLEFCCDISVSPYNRRTKKSLNAILNFVEKLRRKRDPSFVFNGLSGFRWWWAFCKKHSIVSLYFNDENENDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00219718;
- 90% Identity
- -
- 80% Identity
- -