Vcra004090.1
Basic Information
- Insect
- Vespa crabro
- Gene Symbol
- -
- Assembly
- GCA_025728115.1
- Location
- JAITYU010017192.1:14132-19090[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.2e-12 5.5e-09 35.3 0.0 2 35 41 75 40 82 0.91
Sequence Information
- Coding Sequence
- ATGGTAAAATTTGGAGGAGCCAAGTTGTTGGAATCGTCCCACGCTTGGCTCGGTGCCTCCACCTCCAGTATAGCAGcTGACTATACGAGCCTGCTGAAGCTGAAGGCACCTACGTGGACTCGGCATGACCTTCAAGAAGCAATCGAGGCTGTGGTTACCCAAAAGATGAGGTTCACACAGGCATCAACGAAGTATGGTATACCTAAGGGCACCCTATACGACAACATCCTTGGTAAATCGAAGAGGATGATGGTTCTCGAGGAAGCTGGTTTAAATTCGAACGAGGAAACGGCCGTCCTTGAATTTTGTTGCGACATAAGCATTAGCCCATATAATCGACGAACGAAAAAGTCCCTTAACGTGATATTAAACTTCGTTGAAAAGTTAAGACGAAAACGCGATCCTGGGTTCGTCTTTACCGGGCTCTCGGGTTTTCGTTGGTGGTGGGCATTTTGTAAGAAACACTCTATAGTGTCCTTGTATTTCAACGATGAAAATGAGAACGAATGA
- Protein Sequence
- MVKFGGAKLLESSHAWLGASTSSIAADYTSLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMVLEEAGLNSNEETAVLEFCCDISISPYNRRTKKSLNVILNFVEKLRRKRDPGFVFTGLSGFRWWWAFCKKHSIVSLYFNDENENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00219718;
- 90% Identity
- iTF_00961746;
- 80% Identity
- iTF_01513395;