Csar001736.1
Basic Information
- Insect
- Cephus sareptanus
- Gene Symbol
- -
- Assembly
- GCA_030142515.1
- Location
- JARQTD010000122.1:429159-431518[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-11 2.1e-08 33.9 0.0 2 35 57 91 56 98 0.91
Sequence Information
- Coding Sequence
- ATGCTTGGAGCCCGACTGCCCCGACTGCCTTCAGCCACTTGGGAAATGGCGATCAAGGAACTTCCGgCCAAGTTGTTGGAATCTTCTCACGCTTGGCTCGGAGCCTCCACCTCCAGTATAGCCGCTGACTATTCGAGCCTGCTGAAGCTGAAGGCGCCGACGTGGACGCGACACGATCTTAAGGAGGCGATCGAGGCTGTGGTCACGCAGAAGATGCGCTTCACGCAAGCATCGACCAAGTACGGGATCCCCAAAGGCACCCTCTACGACAACATACTCGGCAAGTCCAAGAGGATGATGGTCCTCGAGGAGGCTGCACTCAACTCCAGCGAGGAGGCCTCGGTCCTCGAGTTCTGCTGCGACATCAGCGTCAGCCCTTACAATCGTCGCACCAAGAAGTCTCTTAACGCGATCCTGAACTTTGTCGAGAAGCTCAGACGGAAACGCGATCCTGGCTTCGTCTTCACGGGACTCTCGGGTTTTCGATGGTGGTGGGCCTTCTGCAAGAAGCACTCCATAGTCTCCTTGTATTTCAATGACGAGAACGAAAACGAATGA
- Protein Sequence
- MLGARLPRLPSATWEMAIKELPAKLLESSHAWLGASTSSIAADYSSLLKLKAPTWTRHDLKEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMVLEEAALNSSEEASVLEFCCDISVSPYNRRTKKSLNAILNFVEKLRRKRDPGFVFTGLSGFRWWWAFCKKHSIVSLYFNDENENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00219718;
- 90% Identity
- iTF_00961746;
- 80% Identity
- iTF_00295929; iTF_00292860; iTF_00297469; iTF_00294387; iTF_00291455;