Tcit041083.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tiliacea citrago
Gene Symbol
ZFY
Assembly
GCA_963921375.1
Location
OY992806.1:15847631-15866885[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.12 18 7.5 0.7 1 23 106 128 106 128 0.97
2 12 0.22 33 6.7 4.1 1 23 135 157 135 157 0.97
3 12 0.63 93 5.2 1.5 1 15 161 175 161 184 0.82
4 12 4.7e-06 0.0007 21.3 3.6 1 23 189 211 189 212 0.95
5 12 0.0016 0.23 13.4 0.9 2 23 219 240 218 240 0.97
6 12 1e-05 0.0016 20.3 0.7 2 23 254 275 253 275 0.97
7 12 1.2 1.8e+02 4.3 4.7 3 23 281 302 279 302 0.95
8 12 0.00021 0.031 16.2 3.1 2 23 313 335 312 335 0.96
9 12 0.079 12 8.1 0.3 1 23 342 365 342 365 0.93
10 12 0.0033 0.49 12.4 0.4 5 23 377 396 375 396 0.93
11 12 0.00013 0.019 16.8 4.6 1 23 405 427 405 427 0.98
12 12 0.00065 0.096 14.6 0.4 1 23 432 455 432 455 0.97

Sequence Information

Coding Sequence
ATGGTCACTAAATGCTGTGTTACTGTATGTTTAGTTGaaaaagaaacaaaagatcTGAAATCAAAATTGCCGATAAAGAAGAGATTAGAAAAACGAGTCAAGTCAGAAGATGACGACTTCCCAAAGAAAGAAAAGCCGGAAGAACAGAATGTCACAGAAGAAAATGAACAGCAAGTGGATAATTCTCAACCTAAGACGGAAACCCCCTTGATGTACTCCTACGAAACATTAAGGAACATAGAAATTGTGACCATCGACGAAGAAGAACGTCAGAAAGAGTACCAAGAGACGTTGAGGTCGCGTCAGCACATGCGCCATGTGTGTGTACACTGCGCGCTTGGCTTCGTTCTCAAACAGGCGTTTGATGTGCATATGAAGGTTCATTCTCCCCAATCAGGCGACCACGAGTGCTTACTCTGTCACTCCCGTCTCAAAACTGCTGACATGTTATACCGGCACCGCTTACGGCATTACCGCCGCTACCGGTGCCTGCTCTGTCGAACGCGGTTTAAAGATAAAGACACTGCCGCCTGCCATGTCATGAACGATCATGCCGGACAGACCTTCGAGTGCGATCATTGTGGAAGAGGATTCAAACGACCGCAGTACTTGAAGAGGCACGTGGAACAGCACCACACCAAGCCCCACCATCTTGAATGTGGCGTCTGCTTCCGAGTCTTCCACGAGAGGGGCTGGTATAGGTCTCATATCAGgacACATAACGAAGAGGTGCGAGCCAAGACGGTGCGCCTGCCAGTCACCTGCGAGATCTGTTCTCGCGACTACAAGAACAAAGCAAGCCTGAAGCGTCACCTTCTGACTCACGATGAGAATGTCCACTGCGAGATCTGTTACGAGAAGTGCAAGAATCGGATCACATTGGGACATCACTACCTGAAAGTGCATAATGAGAAATATGTTGGtgCGCCGGAACAGACCTGTCCGCATTGCGAGCGGATCTGTGCGACACGAGCGATGCTCAAGCGACATATACAAAGGATGCACAGCGATAGAACTAAGAAATACCAATGCGATTACTGCCAGCGCCTCTACCTGACTAAAGGCGAGGTCCGGGCGCACATCACGTGGTCGCACATGCCGGCTGAAGCCCGAGGGGGGCACGCTTGCACGTGTGGTCGTATCTTCAGGAGCCCCTCGCTGCTTCGCGACCATAAGGCCAGGTTCCATGCGTCACAGCCACCACCAAGGGTTCACCAGTGTGAACATTGTGAAAAGGCTTTTGCGAACAAACAAGTGCTGAATCGTCACAAGAAAAGCCACTCCAACGAGATGTATCCCTGCAAAGAATGTGGGTTACTCTTCAAAACTCAACCTTACGTCAAAGTCCACTATCAAATCAAACATCTAAATATGACGAGAGCACAAATTAAAGCACAGAGGAAACTTAACAAGGAACAGTTAATACTGAATAATATTCATAGAAGTACTAATTGGGAACCACCCATCTCTGACAAGAAGAAAGGTTCAGTTACTATTGAAAATGAAGAAGACCCTCTTTTGGTTCAGGAGGCGGATATACAAATCAAATTGGAGAGGGAAGATGACCTTCAAATCCCAACGTTCCAAACTTTTGTTGACATTAGTAGGGAATGA
Protein Sequence
MVTKCCVTVCLVEKETKDLKSKLPIKKRLEKRVKSEDDDFPKKEKPEEQNVTEENEQQVDNSQPKTETPLMYSYETLRNIEIVTIDEEERQKEYQETLRSRQHMRHVCVHCALGFVLKQAFDVHMKVHSPQSGDHECLLCHSRLKTADMLYRHRLRHYRRYRCLLCRTRFKDKDTAACHVMNDHAGQTFECDHCGRGFKRPQYLKRHVEQHHTKPHHLECGVCFRVFHERGWYRSHIRTHNEEVRAKTVRLPVTCEICSRDYKNKASLKRHLLTHDENVHCEICYEKCKNRITLGHHYLKVHNEKYVGAPEQTCPHCERICATRAMLKRHIQRMHSDRTKKYQCDYCQRLYLTKGEVRAHITWSHMPAEARGGHACTCGRIFRSPSLLRDHKARFHASQPPPRVHQCEHCEKAFANKQVLNRHKKSHSNEMYPCKECGLLFKTQPYVKVHYQIKHLNMTRAQIKAQRKLNKEQLILNNIHRSTNWEPPISDKKKGSVTIENEEDPLLVQEADIQIKLEREDDLQIPTFQTFVDISRE