Ckad005372.1
Basic Information
- Insect
- Caradrina kadenii
- Gene Symbol
- -
- Assembly
- GCA_947462355.1
- Location
- OX381697.1:968159-982226[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.066 3.8 8.2 1.1 1 23 150 172 150 172 0.97 2 12 9.6 5.5e+02 1.4 3.5 1 23 179 201 179 201 0.96 3 12 0.64 37 5.1 1.5 1 15 205 219 205 228 0.82 4 12 2.4e-05 0.0014 19.0 0.7 1 23 233 256 233 256 0.92 5 12 0.00068 0.04 14.4 0.7 2 23 263 284 262 284 0.97 6 12 1.9e-05 0.0011 19.4 1.8 2 23 298 319 298 319 0.98 7 12 2.9 1.7e+02 3.0 4.9 3 23 325 346 323 346 0.95 8 12 6.1e-05 0.0035 17.7 3.1 2 23 357 379 356 379 0.96 9 12 0.022 1.3 9.7 1.2 1 23 386 409 386 409 0.94 10 12 0.0034 0.2 12.3 0.4 5 23 421 440 419 440 0.93 11 12 9.5e-05 0.0055 17.1 2.6 1 23 449 471 449 471 0.98 12 12 0.0013 0.074 13.6 0.5 1 23 476 499 476 499 0.95
Sequence Information
- Coding Sequence
- ATGGGCAAAGATTTACAACATTGCTCAACAGTGATGAGACACATGTCTTCCTCTCCATCCATCCACATTTATATTCCTAACTCTGTTGAACACATGCGTCTGTTCCCTCCTATTCACACGCCCACACCAAGACAAAGGTTCCCTTTCAACTTCCTTCCTTCCCTTCCCTTCCTTCTATCCTTCGAAACCATAGATCTGAAATCGACATTGCCGTTAAAGAAGAGAATAAAGCAAGAAGATGAAGAGTGCTTCACACAGAAAGAAGAACCTCAAGAAAAGAATGCCGTTGAAGAAAATGAACAGCAAGAGGATAATAGTCGACCTAAGATGGAAACCCCCCTGATGTACTCCTACGAAATAACGAAGAACATAGAAATAGTGACGATCAACGAAGAGGAACGTCTGAAGGAGTACCAGGAGACGCTGAAGGCCCGTCAGCACATGCGTCATGTTTGTGAACACTGCGCGCTTGGTTTCGTTCTGAAACAGGCTTTCGATATGCATATGAAGGTTCATGCTCCTGAATCAGGCACACACGAATGCTTACTCTGCCATTCTCGTCTCAAAACCGCTGACATTTTATACCGGCACCGGTTACGGCACTACCGCCGGTACCGGTGCCTGCTCTGCCGGACGCGGTTTAAAGACAAAGACACTGCCGCCTGCCACGTCATGAACGACCATGCGGGACAGACGTTTGCATGTGATCGTTGTGGGAGAGGATTCAAACGACCGCAGTACCTGAAGAGGCACGTGGAGCAGTACCACACGAAGCCTCACCACCTGGAATGTGGCGTCTGCTCCCGGGTCTTCCACGAGAGGGGCTGGTATAGGTCCCATATCAGAACTCATAACGAGGAGGTAAGAGCCAAGACGGTGCGGCTGCCAGCCACCTGCAAGATCTGTTCCCGCGACTACAAGAACAAGGCGAGCCTCAAGCGTCACCTGCTCACACACGACGAGGATGTCCACTGCGAGATCTGTTACCTGAAGTGCAAGAACAGGATCACGTTGGGACATCATTACTTGAAAGTTCATAATGAGAAATATCTGGGTGCGCCTGAGCAGACCTGCCCGCACTGCGACCGGATCTGCGCGACGCGCGCGATGCTCAAGCGGCACATACAGAGGATGCACAGCGACAGGACTAAGAAGTACCAATGTGACCATTGCCAGCGCTTCTACCTGACCAAAGGCGAGGTCCGGGCGCACATCACCTGGTCGCACATGCCGGCTGAGGCCCGAGGGGGGCACGCGTGCACCTGTGGTCGCATATTCCGGAGCCCCTCGCTGCTGCGCGACCACAAGGCGAGGTTCCACGCGGCGCAGCCACCACCGAGGGTTCACCAGTGTGAGCAGTGTGAGAAGGCTTTTGCGAACAAGCAAGTACTGAACCGTCACAAGAAAAGTCACTCCAACGAGATGTACCCTTGCAAGGAGTGCGGGTTACTCTTCAAGACCCAACCTTACGTCAAGGTCCATTACCAACTCAAACATTTGAACATGACCCGAGCAGAAATCAAAGCCCAGAGGAAACTCAACAAAAACACAATGATACAAAACAATATACATAAGAGTACGAATTGGGAACCGCCCATCGCAAACAAGAAGAAGAGTGCAGTTGTAGTTGGAGAGGATCCTCTGCTGGTGCAGGAAAGTGATATACAGATCAAAGTGGAGAGGGTGGACGCGGACGATGAGCTGCAGATCCCGACGTTCCAGACTTTTAGTGATATTATTATGGAATAA
- Protein Sequence
- MGKDLQHCSTVMRHMSSSPSIHIYIPNSVEHMRLFPPIHTPTPRQRFPFNFLPSLPFLLSFETIDLKSTLPLKKRIKQEDEECFTQKEEPQEKNAVEENEQQEDNSRPKMETPLMYSYEITKNIEIVTINEEERLKEYQETLKARQHMRHVCEHCALGFVLKQAFDMHMKVHAPESGTHECLLCHSRLKTADILYRHRLRHYRRYRCLLCRTRFKDKDTAACHVMNDHAGQTFACDRCGRGFKRPQYLKRHVEQYHTKPHHLECGVCSRVFHERGWYRSHIRTHNEEVRAKTVRLPATCKICSRDYKNKASLKRHLLTHDEDVHCEICYLKCKNRITLGHHYLKVHNEKYLGAPEQTCPHCDRICATRAMLKRHIQRMHSDRTKKYQCDHCQRFYLTKGEVRAHITWSHMPAEARGGHACTCGRIFRSPSLLRDHKARFHAAQPPPRVHQCEQCEKAFANKQVLNRHKKSHSNEMYPCKECGLLFKTQPYVKVHYQLKHLNMTRAEIKAQRKLNKNTMIQNNIHKSTNWEPPIANKKKSAVVVGEDPLLVQESDIQIKVERVDADDELQIPTFQTFSDIIME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01441398;
- 90% Identity
- iTF_00449573;
- 80% Identity
- -