Mbra024649.1
Basic Information
- Insect
- Mamestra brassicae
- Gene Symbol
- zfy1
- Assembly
- GCA_905163435.1
- Location
- LR991013.1:11834132-11847182[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.25 21 6.5 1.0 1 23 102 124 102 124 0.97 2 12 0.25 21 6.5 3.8 1 23 131 153 131 153 0.97 3 12 0.74 62 5.1 1.1 1 15 157 171 157 180 0.82 4 12 1.4e-05 0.0012 19.9 1.8 1 23 185 207 185 208 0.94 5 12 0.00095 0.079 14.2 0.8 2 23 215 236 214 236 0.97 6 12 1.9e-05 0.0016 19.5 1.8 2 23 250 271 250 271 0.98 7 12 0.47 40 5.7 3.1 3 23 277 298 275 298 0.95 8 12 6.3e-05 0.0052 17.9 3.1 2 23 309 331 308 331 0.96 9 12 0.13 11 7.4 0.5 1 23 338 361 338 361 0.92 10 12 0.0035 0.29 12.4 0.4 5 23 373 392 371 392 0.93 11 12 0.00014 0.012 16.8 4.7 1 23 401 423 401 423 0.98 12 12 0.0013 0.1 13.8 0.4 1 23 428 451 428 451 0.95
Sequence Information
- Coding Sequence
- ATGTTACCCATACGGACCTACCTCGACATAAAATCTAAAGATCTGAAATCAAGATTGCCGCTTAAGAAGAGATTAGAGAAACGAGTCAAGCAAGAAGATGAAGACTTTCCGAAGCAAGAGAAAACAGAAGTAAAGAATGATGCTGAAGAAAATGAACAACAAGAGGATAATGTTGAACCTAAGATGGAAACCCCCCTGATGTACTCCTATGAAACATTAAGGAACATAGAAATCGTTACTATCGACGAAGAAGAACGTCAGAAGGAGTACGAGAAGACGCTGAAGGCTCGTGAGCACATGCGGCACGTGTGTGTACACTGCGCCCTCGGCTTCGTCCTCAAGCAGGCGTTCGATATGCACATGAAGATTCATGCTCCTGAATCAGGCGACCACGAATGCGTACTCTGCCACTCCCGTCTCAAAACCGCTGACATGCTGTACAAGCACCGCTTACGGCATTATCGCCGCTACCGGTGCCTGCTCTGCCGGATGCGGTTCAAAGATAAGGATACTGCCGCCTGCCATGTCATGAACGATCATACCGGACAGACCTTCGAGTGCGATCGATGTGGGAGAGGGTTCAAAAGACCGCAGTACCTGAAGAAGCATGTGGCGCAGCATCACACCAAGCCCCACGATCTTGTATGCGGGATCTGCTTCCGAGTCTTTCACGAGCGAGGCTGGTATAGATCCCACATCAGaacacATAACGAGGAGGTTCGAACCAAGACAGTTTGCTTGCCAGCCACCTGCAAGATATGTTCCCGCGACTACAAGAACAAGGCGAGCCTAAAGCGTCATCTCCTCACTCACGATGAAGACGTCCATTGTGAGATATGTTTCGAGAAGTGCAAGAATCGGATCACTTTGGGTAATCACTACTTGAAGGTGCATAATGAGAAATATGTTGGTGCGCCTGAGCAAACGTGCCCCCATTGCGACCGCATCTGTGCGACGCGCGCCATGCTCAAGCGACACATACAGAGGATGCACAGCGATAGAACAAAGAAATACCAATGCGACTACTGCCAGCGCCTCTACCTGACCAAGGGCGAAGTCCGCTCACACATCACATGGTCGCACATGCCGGCCGAAGCCCGAGGGGGCCACGCCTGCACCTGCGGCCGCATATTCCGGAGCCCCTCGCTACTGCGCGACCACAAGGCCAGGTTCCATGCGGCTCAGCCTCCGCCCAGGGTGCACCAATGTGACCACTGCGAGAAAGCTTTTgcgAACAAGCAAGTCCTCAACCGCCACAAGAAGAGCCACTCCAATGAGATGTACCCATGCAACGAGTGCGGACTACTCTTCAAGACTCAGCCCTACGTCAAGGTACACTACCAACTTAAACACCTCAACATGACTCGAGCACAAATCAAGGCACAGAGAAAGCTCAACAGGGAACAGATCATACAGAACAATATCAATAGAAGTACGAATTGGGAGCCACACATTGCCGACAAGAAGAATAGTGCAGTTGCTATTGAAAATGAAGAGGACCCGCTCCTGGTTCAGGAGGGCGAGATACCAATCAAAATGGAGgaagaaaatgaaattaaaatcccAACTTTCCAaacttttattgatattagTAATTAG
- Protein Sequence
- MLPIRTYLDIKSKDLKSRLPLKKRLEKRVKQEDEDFPKQEKTEVKNDAEENEQQEDNVEPKMETPLMYSYETLRNIEIVTIDEEERQKEYEKTLKAREHMRHVCVHCALGFVLKQAFDMHMKIHAPESGDHECVLCHSRLKTADMLYKHRLRHYRRYRCLLCRMRFKDKDTAACHVMNDHTGQTFECDRCGRGFKRPQYLKKHVAQHHTKPHDLVCGICFRVFHERGWYRSHIRTHNEEVRTKTVCLPATCKICSRDYKNKASLKRHLLTHDEDVHCEICFEKCKNRITLGNHYLKVHNEKYVGAPEQTCPHCDRICATRAMLKRHIQRMHSDRTKKYQCDYCQRLYLTKGEVRSHITWSHMPAEARGGHACTCGRIFRSPSLLRDHKARFHAAQPPPRVHQCDHCEKAFANKQVLNRHKKSHSNEMYPCNECGLLFKTQPYVKVHYQLKHLNMTRAQIKAQRKLNREQIIQNNINRSTNWEPHIADKKNSAVAIENEEDPLLVQEGEIPIKMEEENEIKIPTFQTFIDISN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01441398;
- 90% Identity
- iTF_01030531; iTF_00851123; iTF_01230970;
- 80% Identity
- -