Slut004216.1
Basic Information
- Insect
- Sialis lutaria
- Gene Symbol
- MBD3
- Assembly
- GCA_949319165.1
- Location
- OX439233.1:24707521-24711575[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-26 1.1e-22 79.6 0.1 2 73 7 73 6 76 0.93 2 2 0.0017 5.2 7.0 0.0 29 74 96 149 78 152 0.83
Sequence Information
- Coding Sequence
- ATGGCAAATATAACTatagaaaaaaagaaatatgaaTGTAATGCTCTTCCAAAAGGTTGGCAAAGAGAAGAAGTTCTTCGTAAATCAGGGTTATCTGCTGGAAAAGTTGATGTTTATTATTACAGTCCGAGTGGACGCAAGTTCCGCAGCAAACCTCAATTGGCACGCTATCTTGGTGAGGCCATCGACTTGGCTACATTTGACTTCCAGTCTGGCAAAGTCAACTCTCTGCTCTTGCGAAACAACAAGAAGCAGAGAGGAACACAATTTGATTACAGcCGTGGTATAAGAAATGATGCGTCTTTAGTTCCACCTATAAGACAAACAGCATCAATTTTTAAGCAACCAGTAACTGTGTATAAAACACAAGAAAGTAAGGTAAAGACAGATATCAAACATGGGCCTCAAGAAAAACCAAAGCAGTTATTTTGGGAAAAACGACTAGAAGGACTTCGTGCTTGTGATTTAGATGGGGTTGAATTTGATGCGATGGAGTTACCAAAAGGACTTAAACCAGTAGGACCCCACGTCACAGAAGAAACAATATTGCAATCAGTTGCAACAGCTTTACATGTATCTACGCAGCCCGTCACTGGACAAACTGGATCTCGGTCTTCACTTGAAAAAAATCCaggtgtttttttaaaccctgaACAACCACTTGTGCAAGCAGTCAAAGTGGGCGAAGATGATATTAAATTACAAGAAGAAAGAGTCGCTCTTGCAAGAAAAAAGTTACAAGAAGCATTAAAGTCATAG
- Protein Sequence
- MANITIEKKKYECNALPKGWQREEVLRKSGLSAGKVDVYYYSPSGRKFRSKPQLARYLGEAIDLATFDFQSGKVNSLLLRNNKKQRGTQFDYSRGIRNDASLVPPIRQTASIFKQPVTVYKTQESKVKTDIKHGPQEKPKQLFWEKRLEGLRACDLDGVEFDAMELPKGLKPVGPHVTEETILQSVATALHVSTQPVTGQTGSRSSLEKNPGVFLNPEQPLVQAVKVGEDDIKLQEERVALARKKLQEALKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343045; iTF_01445674; iTF_01447587; iTF_01449635; iTF_00759275; iTF_00370224; iTF_01288978; iTF_01448572; iTF_00238917; iTF_00332360; iTF_01565609; iTF_01060635; iTF_00396301; iTF_01212685; iTF_01131560; iTF_01131561; iTF_00243194; iTF_00894790; iTF_00242197; iTF_00995227; iTF_01530200; iTF_01510641;
- 90% Identity
- iTF_01343045;
- 80% Identity
- iTF_01343045;