GBI_03579-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- Mbd2
- Assembly
- GCA_017312745.1
- Location
- Scaffold15:3036932-3049877[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-07 0.00016 21.9 0.0 37 72 18 48 16 52 0.87 2 2 0.0027 4.1 7.8 0.1 28 73 66 124 51 139 0.81
Sequence Information
- Coding Sequence
- ATGCAGTGCCCTACCGAAAGGATGGCAAAGAGAAGAAGTGATAAGAAAATCGGTCCAAATGGGAAGAAGTTTCGCAGCAAACCTCAGCTCGCTCGGTACTTGGGCGACGCACTTGATCTTGCCACCTTTGATTTTCGTTCTGGCAAAATCAATTCCCTGCTCCTCCGCAAAAACAAGAAGCAGAGAGGGACACAGTTTGATTACAGCCGAGGGGTGCGAAACGATGCCTCCCTTGTCCCACCAATACGCCAGACAGCTTCGATTTTCAAGCAGCCTGTGACGGTGTACAAGACACAAGAGGGAAAAGTGAAAGCAGATTTTAAACATGGTGCACAAGAAAAACCAAAGCAGCTGTTCTGGGAGAAGCGACTGGAAGGATTGCGTGCATGTGATCTGGATGGTTTTGAGTTTGATGCAATGGAGCTCCCCAGAGCACTCCGGGCTGTGGGCCCTCATGTAGGTGAGGAAACACTGCTACAGTCTGTGGCTACAGCGCTTCATGTATCCACCCAGCCTGTCACTGGTCAGACAGGGTCTCGGTCAGCCCTTGAGAAAAACCCAGGGGTGTTTCTCAACCCAGACCAACCTCTTGTTCAGGCAGTTGCTGTTGCAGATGAAGATATTAAAAGACAAGAGGAAAGAGTTGCAACAGCACGCAAGAAATTGCAAGATGCCCTAAAGAGATTTGTTGCATAA
- Protein Sequence
- MQCPTERMAKRRSDKKIGPNGKKFRSKPQLARYLGDALDLATFDFRSGKINSLLLRKNKKQRGTQFDYSRGVRNDASLVPPIRQTASIFKQPVTVYKTQEGKVKADFKHGAQEKPKQLFWEKRLEGLRACDLDGFEFDAMELPRALRAVGPHVGEETLLQSVATALHVSTQPVTGQTGSRSALEKNPGVFLNPDQPLVQAVAVADEDIKRQEERVATARKKLQDALKRFVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343982;
- 90% Identity
- iTF_01288978; iTF_01565609; iTF_00370224; iTF_00396301; iTF_00995227; iTF_00243194; iTF_00894790; iTF_00242197;
- 80% Identity
- -