Mvio048497.1
Basic Information
- Insect
- Metallyticus violacea
- Gene Symbol
- Mbd2
- Assembly
- GCA_030762175.1
- Location
- CM060845.1:92017339-92040058[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-09 5.3e-05 24.6 0.0 36 72 44 75 21 79 0.88 2 2 0.00077 10 7.6 0.1 28 73 93 151 74 154 0.81
Sequence Information
- Coding Sequence
- ATGTGGACAGAAGATAATGGTCTTCACTTGAATGAGGACAAGACTGTCTGTTACATTTCAAAAGGATGGAAAGCCTGTGGTTTTCCACATATAGAAGAGAACCCTCAAAAATGTAACACAGTTCAAGTATTTAGCCCCAATGGAAAGAAATTTCGCAGTAAGCCACAGTTGGCCCGATATCTTGGAGATGCTCTTGATCTTGCTACATTTGACTTCCGCTCTGGAAAAATTAATTCCTTATTGTTACGAAAGAATAAGAAGCAAAGGGGCACACAATTTGATTACagCCGAGGTGTAAGAAATGATGCTTCATTAGTACCTCCAATACGGCAGACAGCATCCATCTTCAAACAACCTGTCACTGTTTATAAAACACAAGAGGGAAAGGTAAAGACAGATTTCAAACATGGTCCCCAGGAAAAGCCAAAacagTTGTTCTGGGAGAAGCGACTTGAGGGCTTGAAGGCATGTGATTTGGATGGACATGAATTTGATGGTATGGAATTGCCAAGGCTGTTAAGAGCAGTGGGACCCCATGTGGGGGAAGAAACCTTGCTACAGTCTGTTGCAACAGCTCTTCATATGTCCACACAACCTGTCACGGGTCAAACAGGTTCCAAATCTGCTCTTGAGAAAAATCCTGGTGTATTTCTCAACCCAGATCAACCTTTGGTGCAGGCAGTATCTGTGGCAGATGAAGACATTAAAAGGCAAGAAGAAAGAGTTGCCACTGCTCGCAAGAAACTTCAGGAAGCACTTCGCAGACTGATGCCCTAA
- Protein Sequence
- MWTEDNGLHLNEDKTVCYISKGWKACGFPHIEENPQKCNTVQVFSPNGKKFRSKPQLARYLGDALDLATFDFRSGKINSLLLRKNKKQRGTQFDYSRGVRNDASLVPPIRQTASIFKQPVTVYKTQEGKVKTDFKHGPQEKPKQLFWEKRLEGLKACDLDGHEFDGMELPRLLRAVGPHVGEETLLQSVATALHMSTQPVTGQTGSKSALEKNPGVFLNPDQPLVQAVSVADEDIKRQEERVATARKKLQEALRRLMP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343982;
- 90% Identity
- iTF_00759275;
- 80% Identity
- -