Bneb011938.2
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- MBD3
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000002.1:50195255-50198600[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3e-26 6.7e-22 78.3 0.1 2 72 7 72 6 75 0.94 2 2 0.0014 11 7.1 0.1 29 74 96 149 80 152 0.84
Sequence Information
- Coding Sequence
- ATGGCTAGTATAACAATTGAGaagaaaaaatatgattgcAATTCTTTGCCAAAAGGATGGCAAAGAGAAGAGGTGTTGAGAAAAACGGGATTATCAGCCGGAAAAGTAGATGTATATTATTACAgTCCAAATGGGCAAAAGTTTCGCAGCAAACCACAGTTGGCACGTTATTTTGGTGATTCCATTGATCTGGCTATGTTTGATTTCCACACTGGCAAATTCAACTCTCTGCTCTTGCGCAAAAACAAGCTGCAGAGGGGTACCCAATTTGATTACAGtaGAGGTGTAAGAAACGATGCCTCCTTAGTACCTCCAATTAGGCAAACCGCTTCAATTTTTAAACAACCAGTTACTGTTTATAAGACACAAGAAGGTAAAGTGAAAACAGATTTTAAACATGGGCCACAAGAAAAACCAAAACAACTGTTTTGGGAGAAACGTTTAGAGGGATTGCGTGCATGCGACTTAGATGGAATCGAGTTCGACGCTATGGAACTTCCTAAAGGTTTGAAACCGgTTGGACCACATGTTAGTGAAGAGACGATAATTCAATCATTAGCGACAGCGCTGCATGTTTCAACACAACCAGTCACTGGCCAAACAGCTCCAAAATCAGTATTAGAAAAGAATCCGGGCGTTTTTTTAAACCCGGAACAACCACTAGTTCAAGCGGTACAAATCGGTGAAGAGGACATTCGTCGTCAAGAAGAACGTGTTCAACTTGCTCGAAAACGATTACAAGAAGCTCTCCgaagttaa
- Protein Sequence
- MASITIEKKKYDCNSLPKGWQREEVLRKTGLSAGKVDVYYYSPNGQKFRSKPQLARYFGDSIDLAMFDFHTGKFNSLLLRKNKLQRGTQFDYSRGVRNDASLVPPIRQTASIFKQPVTVYKTQEGKVKTDFKHGPQEKPKQLFWEKRLEGLRACDLDGIEFDAMELPKGLKPVGPHVSEETIIQSLATALHVSTQPVTGQTAPKSVLEKNPGVFLNPEQPLVQAVQIGEEDIRRQEERVQLARKRLQEALRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343982;
- 90% Identity
- iTF_00332360; iTF_01060635;
- 80% Identity
- -