Sful005997.1
Basic Information
- Insect
- Sialis fuliginosa
- Gene Symbol
- MBD3
- Assembly
- GCA_961205875.1
- Location
- OY540812.1:12523540-12526346[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-26 1e-22 79.6 0.1 2 73 7 73 6 76 0.93 2 2 0.003 4.8 7.0 0.0 29 74 96 149 78 152 0.83
Sequence Information
- Coding Sequence
- ATGGCAAATATAACtatagaaaaaaagaaatatgaaTGTAATGCTCTTCCAAAAGGCTGGCAAAGAGAAGAAGTTCTTCGTAAATCGGGGTTATCTGCAGGAAAAGTTGATGTTTATTATTACAGTCCGAGTGGACGCAAGTTCCGCAGCAAACCTCAGCTGGCACGCTATCTTGGTGAGGCCATCGACTTGGCTACATTTGACTTCCAGTCTGGCAAAGTCAACTCTCTGCTCTTGCGAAACAACAAGAAGCAGAGAGGAACGCAATTTGATTACAGCCGCGGTATAAGAAATGATGCGTCTTTAGTTCCACCTATAAGACAAACAGCGTCAATTTTTAAACAACCAGTAACTGTATATAAAACACAAGAAAGTAAGGTAAAGACAGATATCAAACATGGGCCTCAAGAAAAACCAAAGCAATTATTTTGGGAAAAACGACTAGAAGGACTTCGTGCTTGTGATTTAGATGGGGTTGAATTTGATGCGATGGAGTTACCAAAAGGACTTAAACcaGTAGGACCGCATGTCACAGAAGAAACCATATTGCAATCAGTTGCAACAGCTTTACACGTATCTACGCAGCCCGTTACTGGACAAACTGGGTCTCGGTCTTCACTTGAAAAAAATCCAGGTGTTTTTTTAAACCCTGAACAACCACTTGTGCAAGCTGTCAAAGTGGGAGAAGATGATATTAAATTACAAGAAGAAAGAGTCGCTCTTGCAAGAAAAAAGTTACAAGAAGCATTAAAGTCATAG
- Protein Sequence
- MANITIEKKKYECNALPKGWQREEVLRKSGLSAGKVDVYYYSPSGRKFRSKPQLARYLGEAIDLATFDFQSGKVNSLLLRNNKKQRGTQFDYSRGIRNDASLVPPIRQTASIFKQPVTVYKTQESKVKTDIKHGPQEKPKQLFWEKRLEGLRACDLDGVEFDAMELPKGLKPVGPHVTEETILQSVATALHVSTQPVTGQTGSRSSLEKNPGVFLNPEQPLVQAVKVGEDDIKLQEERVALARKKLQEALKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343982;
- 90% Identity
- iTF_01343982;
- 80% Identity
- iTF_01343982;