Tgen027737.1
Basic Information
- Insect
- Timema genevievae
- Gene Symbol
- MBD2
- Assembly
- GCA_902155825.1
- Location
- CABFWO010002306.1:18572-30470[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-08 0.00023 22.7 0.0 37 73 2 33 1 36 0.90 2 2 0.00073 9 8.0 0.1 28 74 50 109 38 112 0.82
Sequence Information
- Coding Sequence
- ATGAGTCCTAACGGGCAGAAGTTTCGCAGCAAGGCTCAGCTCGCCCAATATCTGGGCAATACTCTTGATCTCGCCACTTTTGATTTCCGTACAGGCAAAGTAAACTCATTGCTTCTGCGTAAACACAAGAAACAGAGAGGGACCCAATTTGACTACAGCCGAGGTGTGAGGAATGATGCATCACTGGTCCCTCCTATTCGTCAGACAGCGTCCATCTTCAAGCAGCCAGTGACTGTGTACAAGACTCAGGAGGGAAAGGTGAAGACCGACTTCAAGCATGGACCCCAGGAGAAACCCAAGCAGTTATTTTGGGAGAAACGGCTGGAAGGGCTACGCGCATGTGATGTTGATGGAAAGGAGTTTGATGCAATGGAGCTGCCTCGCGCCCTTCGAGCTGTAGGGCCCCATGTGGGAGAAGACACTCTACTTCAGTCCATAGCCACAGCATTGCACATGTCTGCCCAACCTGTCACGGGACAGACAGGTTCCCGGTCTGCCCTTGACAAGAACCCTGGGGTGTTCCTCAACCCCGAGCAACCACTGGTGCAGGCTGTATCGGTGGCCGATGATGACATTAAGCGACAAGAAGATAGAGTGGCAATAGCTCGCAAAAAACTGCAGGAAGCTCTGAAGAGACCAATACAGACATAA
- Protein Sequence
- MSPNGQKFRSKAQLAQYLGNTLDLATFDFRTGKVNSLLLRKHKKQRGTQFDYSRGVRNDASLVPPIRQTASIFKQPVTVYKTQEGKVKTDFKHGPQEKPKQLFWEKRLEGLRACDVDGKEFDAMELPRALRAVGPHVGEDTLLQSIATALHMSAQPVTGQTGSRSALDKNPGVFLNPEQPLVQAVSVADDDIKRQEDRVAIARKKLQEALKRPIQT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343982;
- 90% Identity
- iTF_01449635; iTF_01445674; iTF_01448572;
- 80% Identity
- iTF_01445674;