Csec003377.1
Basic Information
- Insect
- Cryptotermes secundus
- Gene Symbol
- MBD3_1
- Assembly
- GCA_002891405.2
- Location
- NW:439852-445109[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-26 5.4e-23 79.9 0.1 2 72 4 69 3 73 0.92 2 2 0.00022 0.47 9.6 0.3 11 74 85 153 76 156 0.83
Sequence Information
- Coding Sequence
- ATGTCTatagaaaagaagaaatatgaaTGCAGCGCATTGCCGAAAGGATGGCAGAGAGAAGAAGTTACTCGAAAATCTGGTCTTTCTGCAGGAAAAGTAGATGTGTATTACTATAGCCCAAATGGGAAGAAGTTTCGCAGCAAGCCTCAGCTCGCTCGTTACCTGGGAGATGCGCTTGATCTTGCCACATTTGATTTCCGTTCAGGCAAAATCAATTCATTACTCCTACGAAAAAACAAGAAGCAAAGAGGAACTCAGTTTGATTACAGAAGACTGGAATATGATTTCAGTCGTGGTGTAAGAAATGATGCATCACTTGTACCACCAATTCGTCAGacagcctccatctttaagCAACCTGTTACTGTTTATAAGACTCAAGAAGGGAAGGTGAAAACTGATTTCAAACATGGTCCTCAGGAGAAGCCAAAACAGCTATTCTGGGAGAAGAGACTGGAGGGCCTACGAGCATGTGATTTAGATGGATTAGAATTTAATGGAATGGAATTGCCCCGAGCACTACGCGCAGTAGGACCACATGTGGGCGAGGAGACCCTGTTACAGTCTGTGGCTACAGCCCTCCATGTGTCTACACAGCCTGTGACAGGGCAGACAGGTTCAAGATCTGCTCTTGAAAAAAATCCAGGTGTTTTTCTAAATCCTGACCAACCTCTAGTGCAGgCAGTGTCTGTGGCAGATGAAGATATCAAGAGACAAGAGGAGAGAGTTTCAGTAGCACGGAAGAAACTTCAAGATGCTTTGAGGAGGATAGTGGCTTAG
- Protein Sequence
- MSIEKKKYECSALPKGWQREEVTRKSGLSAGKVDVYYYSPNGKKFRSKPQLARYLGDALDLATFDFRSGKINSLLLRKNKKQRGTQFDYRRLEYDFSRGVRNDASLVPPIRQTASIFKQPVTVYKTQEGKVKTDFKHGPQEKPKQLFWEKRLEGLRACDLDGLEFNGMELPRALRAVGPHVGEETLLQSVATALHVSTQPVTGQTGSRSALEKNPGVFLNPDQPLVQAVSVADEDIKRQEERVSVARKKLQDALRRIVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343982;
- 90% Identity
- iTF_00759275;
- 80% Identity
- -