Rluc028940.1
Basic Information
- Insect
- Reticulitermes lucifugus
- Gene Symbol
- Mbd2
- Assembly
- GCA_026260175.1
- Location
- JAKCWW010000558.1:57575-62329[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-26 9.4e-23 80.3 0.1 2 72 4 69 3 73 0.92 2 2 0.00079 3.9 7.9 0.1 28 74 87 146 72 149 0.81
Sequence Information
- Coding Sequence
- ATGTCTATAGAAAAGAAAAAATATGAATGCAGTGCATTACCGAAGGGGTGGCAGAGAGAAGAAGTTATTAGAAAATCTGGCCTTTCTGCGGGAAAAGTAGACGTTTACTATTACAGCCCAAATGGGAAGAAGTTTCGCAGCAAGCCTCAGCTCGCTCGTTACCTGGGAGATGCACTTGATCTTGCCACCTTTGATTTTCGTTCAGGAAAAATCAATTCACTACTTCTCCGAAAAAACAAGAAGCAGAGAGGGACCCAATTTGACTACAGTCGTGGGGTAAGGAATGACGCATCTCTTGTACCACCAATTCGCCAGACAGCCTCCATTTTCAAACAGCCTGTTACTGTTTATAAGACTCAAGAAGGAAAAGTGAAAACTGATTTCAAACATGGTCCACAGGAGAAGCCAAAACAGCTGTTCTGGGAGAAGAGATTAGAGGGCCTACGGGCATGTGATTTAGATGGATTAGAATTTAATGCAATGGAATTGCCCCGAGCACTACGAGCAGTGGGACCCCATGTGGGTGAAGAGACCTTACTACAGTCTGTGGCTACAGCTCTTCATGTATCTACACAACCTGTGACAGGACAGACAGGTTCAAGATCTGCTCTTGAAAAAAATCCAGGTGTCTTTCTAAATCCTGATCAACCTTTAGTGCAGGCAGTGTCTGTGGCAGATGAAGACATCAAGAGACAAGAGGAGAGAGTTTCAGTAGCAAGGAAAAAACTCCAAGATGCCTTAAGGAGGTTATTGACATAA
- Protein Sequence
- MSIEKKKYECSALPKGWQREEVIRKSGLSAGKVDVYYYSPNGKKFRSKPQLARYLGDALDLATFDFRSGKINSLLLRKNKKQRGTQFDYSRGVRNDASLVPPIRQTASIFKQPVTVYKTQEGKVKTDFKHGPQEKPKQLFWEKRLEGLRACDLDGLEFNAMELPRALRAVGPHVGEETLLQSVATALHVSTQPVTGQTGSRSALEKNPGVFLNPDQPLVQAVSVADEDIKRQEERVSVARKKLQDALRRLLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343982;
- 90% Identity
- iTF_00759275;
- 80% Identity
- iTF_00370224;