Tcri015766.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- MBD2
- Assembly
- GCA_002928295.1
- Location
- CM009478.1:49959361-49977530[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-25 2.5e-21 76.5 0.1 4 73 8 72 5 75 0.92 2 2 0.0012 8.7 7.5 0.1 28 74 89 148 78 151 0.82
Sequence Information
- Coding Sequence
- ATGAAGATGAGTCACGAAAAGAAAAAGTTCGAGTGCACTGGTTTGCCAAAAGGTTGGCAAAGGGAAGAAGTCATCAGGAAATCTGGTCTTTCTGCTGGAAAGGTTGACGTGTATTATTACAGTCCTAATGGGCAGAAGTTTCGCAGCAAGGCTCAGCTCGCCCAATATCTGGGCAATACTCTTGATCTCGCCACTTTTGATTTCCGTACAGGCAAAGTAAACTCATTGCTTCTGCGTAAACACAAGAAACAGAGAGGGACCCAATTTGACTACAGCCGAGGTGTGAGGAATGATGCATCACTGGTCCCTCCTATTCGTCAGACAGCATCCATCTTCAAGCAGCCAGTGACCGTGTACAAGACTCAGGAGGGCAAGGTGAAGACCGACTTCAAGCATGGACCCCAGGAGAAACCCAAGCAGTTATTTTGGGAGAAACGGCTGGAAGGGCTTCGCGCATGTGACGTTGATGGAAAGGAGTTTGATGCAATGGAGCTACCTCGTGCCCTTCGAGCTGTAGGGCCCCATGTGGGAGAAGACACACTGCTTCAGTCCATAGCCACAGCGCTGCACATGTCTGCCCAACCTGTCACGGGACAGACAGGTTCCCGGTCTGCTCTTGACAAGAACCCTGGGGTGTTCCTCAACCCTGAGCAACCACTGGTGCAGGCTGTATCGGTGGCTGATGATGACATTAAGCGACAAGAAGATAGAGTGGCAATAGCTCGCAAAAAACTGCAAGAAGCTCTGAAGAGACCAATACAGACATAA
- Protein Sequence
- MKMSHEKKKFECTGLPKGWQREEVIRKSGLSAGKVDVYYYSPNGQKFRSKAQLAQYLGNTLDLATFDFRTGKVNSLLLRKHKKQRGTQFDYSRGVRNDASLVPPIRQTASIFKQPVTVYKTQEGKVKTDFKHGPQEKPKQLFWEKRLEGLRACDVDGKEFDAMELPRALRAVGPHVGEDTLLQSIATALHMSAQPVTGQTGSRSALDKNPGVFLNPEQPLVQAVSVADDDIKRQEDRVAIARKKLQEALKRPIQT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01343982;
- 90% Identity
- iTF_01447587;
- 80% Identity
- iTF_01447587; iTF_01449635; iTF_01448572;