Pcup010608.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963942605.1
- Location
- OZ012714.1:36937170-36943171[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.24 1.3e+04 -3.3 0.5 47 69 52 74 29 94 0.49 2 3 1.3e-115 7.4e-111 371.8 34.4 1 300 100 408 100 408 0.94 3 3 0.0077 4.3e+02 1.6 4.2 191 238 436 482 409 483 0.65
Sequence Information
- Coding Sequence
- ATGAATGCAGAAGTGATGGGTGGTGTTACTAGTGACCAGTGTAAAACTAAAGTCCCTGAAACTGTTCACGTCGAAGGAGTTACCGAAGACGAAGCGAATGATTTTGATGATGAACCTCAAGAGAACTTAAATGATAGTGGGCATCAAGACGGTGAATCATCTGAGGAAAGTGTTGAAAATGATTCTGAGCGTCTTTCGAAACGAAGACGAACTCTCAGTCGAGTAGATGTAGCTGAAGATGTGGAGGAAGTTGATAATGAATGCATTAATGATTTCTTGGATAAATGTACAGATCAAGCAGAGGCGCGCCTAGCAGCCCGGCGGCAAGCCCGCGCAGAGGCCCGCGAGATCCGCATGCGAGAGCTGGAGCGTCAGCAACGAGAGCAAGAGGAGAATGCTGACCGCGCGTACGACATGTTGGCGGAACCGCTAACACGTAGCACTCGCTCCACCTCGGTGACGCCTCATCGTATCGCAACCACGGGGCTCAACAACAGCGCCTACCTCTCCAGCCGACGCAGCTCCGAGGACTCGCTGGAGGATGGCGGCAGCCTCCGCGATGTCCGGcatGAGCTTAAGGAGCTGGAGGACAAATTCCGCAAAGCAATGATAGCAAACGCTCAACTAGATAACGATAAGGCCGCACAGACTTACCAACTGGAACTCCTAAAAGATCGAATAGAAGAACTAGAAGAAGAATACTCCCAACTAAAGCGAGAACATCGAGAAACATGCCGGGAACATGATCAACTCAAGCGGGTATCAGTTAGGTTAAAAGAAGATTTAGCTGCTTATAAAACTGAACTGGAAGAACGAGACAGACTTATAGCGGAAAAAGGATTGGTGATAGTCGGCGAAGAAGTTCCAGACGAAGATGAGAATGATGCTGAAGCGCCTCGAACTCCAAAGAAAGCTTTAGTTAGTATAGAAAACGCCGAGTTGTTGGAAAATGCTGGAGAAGGAAGCCTAGATGTCCGGTTAAAACGTTTCGCAGAGGAAAAGCGAGACCTTATGGATCAGTTAAGTCACCTTAGATTAGAATTAGAAGAAGAACGAAGCAGAAGAAAACGAAGAACAAGTTCTATTACAGCAAATGCTTCACTGCAAAACGGGCCTAGTTTAGAATCTGATGCGTTAGATGTCATCGATGTTCAAAGAGAAGCAAATAAACAGTTAGCCGACTACAAATTCCGACTCCAGAAGTCAGAGCAAGATATTGCAACGTTGCAAGCAACCGTGGCGAGGTTAGAGAGCCAGGTGATTCGCTACAAGTCCGCTGCAGAAGCTTCTGAAAAGGCGGAAGATGAACTAAAagttgaaaaaagaaaactgCAAAGAGAGGCACGAGAGTCGCAAAGCAGGGTAGAAGAACTAGAAACCGCAAATACACATCTTCAACGAAGACTTGAGAAACTAAAAAATGCAAAATCTGCGTTACTGAAAGAACTCTGA
- Protein Sequence
- MNAEVMGGVTSDQCKTKVPETVHVEGVTEDEANDFDDEPQENLNDSGHQDGESSEESVENDSERLSKRRRTLSRVDVAEDVEEVDNECINDFLDKCTDQAEARLAARRQARAEAREIRMRELERQQREQEENADRAYDMLAEPLTRSTRSTSVTPHRIATTGLNNSAYLSSRRSSEDSLEDGGSLRDVRHELKELEDKFRKAMIANAQLDNDKAAQTYQLELLKDRIEELEEEYSQLKREHRETCREHDQLKRVSVRLKEDLAAYKTELEERDRLIAEKGLVIVGEEVPDEDENDAEAPRTPKKALVSIENAELLENAGEGSLDVRLKRFAEEKRDLMDQLSHLRLELEEERSRRKRRTSSITANASLQNGPSLESDALDVIDVQREANKQLADYKFRLQKSEQDIATLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREARESQSRVEELETANTHLQRRLEKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01229729; iTF_01039232; iTF_01040872; iTF_00873043; iTF_01040123; iTF_00028751; iTF_01275280; iTF_00766544; iTF_00768297; iTF_01104374; iTF_00469651;
- 90% Identity
- iTF_01275280;
- 80% Identity
- -