Ning010528.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- lrrfip2
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000225.1:920607-924403[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-112 7.2e-108 360.4 30.0 1 300 86 401 86 401 0.94 2 2 0.02 3.6e+02 0.2 4.5 121 172 400 451 399 462 0.85
Sequence Information
- Coding Sequence
- ATGGGTAGTACTAATAATAAAAACGGTGCTATAACTATCGAAGGTGTAACTGATGATGAATTTAATGATTGTGACGAGTTGGATGATTCTAGTGCCCAAGATGTAGTGTTAGCAATTTCGGATTCGGAAGCAATTGGTTTGGAAACCCATTCAAAACGAAGGCGAACGTTGACCTCTTCTAACTCTATACAAAATGATAATATTGAACCAGATGGGGAATGTATTAATGATTTTCTCGATAAATGCACAGATGATGCCGAAGCAAGGTTGGCCGCTCGCAGACAAGCCCGGGCAGAGGCGCGAGAGATACGTATGCGAGAGCTGGAGCGACAACAACGCGAACAAGAAGAAAATGCAGACCGCGCGTATGACATGCTCACAGAACCATTAGCTCGAACTCCACGCGCTAATGCCATCAGCAGTATCGGAAGTACTCGGACTCCTACAGCTGTGGGGCTCAACAACAGCGCTTATCTCTCCAGCCGTCGGAGTTCGGAGGACTCCCTAGAAGATGGCGGCAGTATTAGAGACGTTCGGCTTGAGCTCAAAGAGTTGGAAGATAAATTTCGCAAAGCAATGATTGCGAATGCTCAGCTAGACAATGACAAAGCTTCCCAAACATATCAACTCGAATTACTCAAAGATAGAATAGAAGAATTAGAAGAAGAGCATACTCAACTTAAACGAGAACACCGTGAAACGTGTCGTGAGCATGAGCAACTGAAAAGAGTTGCAGTGCGTTTAAAAGAAGATCTAGCCTGCTACAAAACAGAACTTGAAGAACGGGATAGGTTAATCGCTGAAAAAGGGTTGGTCATTGTTGGCGAAGAGATACCCGAAGATGAATTGAACGACAGTGGTGACGCGTCCACGGTGCGGACTCCAAAGAAAGCTTTAGTTAGTATAGAAAATGCCGAAATACTAGAAAACGCTGGCGAAGGAAGCTTAGATGTACGGTTAAAACGTTTTGCTGAAGAGAAAAGAGATCTAATGGATCAGTTAAGTCATATTAGATTAGAATTGGAAGAAGAACGAAGCAGGCGAAAACGGAGAACGAGCTCGATTACTGCAAACGCTTCGCTTCAAAACGGTCCAAGTTTAGAATTCGATACTGTAGATGTCATCGATGTGCAACGAGAAGCCAATAAACAATTGGCCGATTATAAATTCAGATTGCAAAAATCCGATCAAGATATTGCCACGTTACAGGCGACTGTCGCGCGCCTCGAAAGCCAAGTTATCCGGTATAAATCGGCGGCGGAAGCATCCGAAAAAGCAGAAGACGAGCTTAAAGTCGAAAAACGAAAACTGCAACGTGAATCCCGAGAATCACAAAGTAGAGTCGAAGAGTTGGAAACGGCAAATAATCACCTGTTAAAACGGCTGGATAAGTTAAAAAATGCCAAATCAGCGCTTCTCAAAGAACTCTGA
- Protein Sequence
- MGSTNNKNGAITIEGVTDDEFNDCDELDDSSAQDVVLAISDSEAIGLETHSKRRRTLTSSNSIQNDNIEPDGECINDFLDKCTDDAEARLAARRQARAEAREIRMRELERQQREQEENADRAYDMLTEPLARTPRANAISSIGSTRTPTAVGLNNSAYLSSRRSSEDSLEDGGSIRDVRLELKELEDKFRKAMIANAQLDNDKASQTYQLELLKDRIEELEEEHTQLKREHRETCREHEQLKRVAVRLKEDLACYKTELEERDRLIAEKGLVIVGEEIPEDELNDSGDASTVRTPKKALVSIENAEILENAGEGSLDVRLKRFAEEKRDLMDQLSHIRLELEEERSRRKRRTSSITANASLQNGPSLEFDTVDVIDVQREANKQLADYKFRLQKSDQDIATLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQRESRESQSRVEELETANNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01225682;
- 90% Identity
- iTF_01039232;
- 80% Identity
- -