Nsal003056.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- lrrfip2
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000017.1:418849-422039[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-112 1.7e-107 360.1 31.0 1 300 89 404 89 404 0.94 2 2 0.052 1.7e+03 -1.1 5.0 122 170 404 452 402 478 0.67
Sequence Information
- Coding Sequence
- ATGGGTAGTGTTACGAGTGATACTAACAATAAAAACGATGTTATAACTATCGAAGGTGCAACTGAAGATGAATTTAATGATTGCGACGTGTTCGATGAAGTTGACCAAGATACAGCTTGCGCAATATCGGATTCAGATGAAATTCGCTTGGAAACTAATCCAAAACGAAGGCGAACATTGACTTCTGTTAACTCTATACAAAATGATAATATTGAACCAGACGAGGAATGTATTAATGATTTTCTCGATAAATGCACAGATGATgcCGAGGCAAGGTTGGCCGCCCGCAGACAAGCCCGGGCAGAGGCGCGAGAGATTCGTATGCGAGAGCTGGAGCGACAACAGCGCGAACAAGAAGAAAATGCAGACCGCGCGTATGATATGCTCACCGAACCATTAGCGCGTACTCCACGCGCTAGTGCCATCAGCAGTATCGGAACTACCCGGACTCCTACAGCTGTGGGACTCAACAACAGCGCATATCTATCCAGTCGTCGGAGCTCGGAGGACTCCCTAGAAGATGGCGGCAGTATTCGAGACGTTCGACTTGAGCTCAAAGAGTTGGAAGATAAATTTCGTAAAGCAATGATTGCTAATGCTCAGCTAGACAATGACAAAGCTTCCCAAACATATCAACTCGAATTACTAAAAGATAGAATAGAAGAATTAGAAGAAGAGCATACGCAACTTAAACGAGAACACCGTGAAACGTGTCGTGAGCATGAGCAACTGAAAAGAGTTGCAGTGCGCTTAAAAGAAGATCTAGCCAGCTACAAAACGGAACTTGAAGAACGGGATAGGTTAATCGCTGAAAAAGGACTGGTTATTGTTGGCGAAAAGATACCTGAAGATGAATTGAACGACAGTGGCGATGCGTCCACGGTGCGGACTCCAAAGAAAGCTTTAGTTAGTATAGAAAATGCCGAGTTACTCGAAAACGCTGGCGAAGGAAGCTTAGATGTACGGTTAAAACGATTTGCAGAAGAGAAAAGAGATCTAATGGATCAATTAAGTCATATTAGATTAGAATTGGAAGAAGAACGAAGCAGACGAAAACGGAGAACGAGTTCGATTACTGCAAACGCGTCACTTCAAAACGGCCCAAGTTTAGAGTTCGATACCGTAGATGTTATTGATGTGCAACGAGAAGCCAATAAACAATTGGCCGATTACAAATTCAGATTGCAAAAATCTGATCAAGATATTGCCACATTACAGGCGACTGTTGCGCGCCTGGAAAGCCAAGTTATCCGGTATAAATCGTCGGCTGAAGCATCCGAAAAAGCAGAAGACGAGCTTAAAGTCGAAAAAAGAAAACTGCAACGTGAATCCCGTGAATCGCTAAGTAGAGTCGAAGAGTTGGAAACGGCAAATAATCACCTATTAAAACGGCTTGATAAGTTAAAAAATGCCAAATCAGCGCTTCTCAAAGAACTCTGA
- Protein Sequence
- MGSVTSDTNNKNDVITIEGATEDEFNDCDVFDEVDQDTACAISDSDEIRLETNPKRRRTLTSVNSIQNDNIEPDEECINDFLDKCTDDAEARLAARRQARAEAREIRMRELERQQREQEENADRAYDMLTEPLARTPRASAISSIGTTRTPTAVGLNNSAYLSSRRSSEDSLEDGGSIRDVRLELKELEDKFRKAMIANAQLDNDKASQTYQLELLKDRIEELEEEHTQLKREHRETCREHEQLKRVAVRLKEDLASYKTELEERDRLIAEKGLVIVGEKIPEDELNDSGDASTVRTPKKALVSIENAELLENAGEGSLDVRLKRFAEEKRDLMDQLSHIRLELEEERSRRKRRTSSITANASLQNGPSLEFDTVDVIDVQREANKQLADYKFRLQKSDQDIATLQATVARLESQVIRYKSSAEASEKAEDELKVEKRKLQRESRESLSRVEELETANNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01225682;
- 90% Identity
- iTF_01039232;
- 80% Identity
- -