Nbre015881.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000344.1:95325-98536[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-112 1.2e-107 360.6 30.0 1 300 95 410 95 410 0.94 2 2 0.096 1.7e+03 -1.0 4.7 122 170 410 458 408 479 0.70
Sequence Information
- Coding Sequence
- ATGAGTGAATCCtcaaatatgggtagtgttaCGAGTGATACTAACAATGAAAACGATGTTATAACTATCGAAGGTGCAACTGAAGATGAATTTAATGATTGCGACGTGTTGGATGAAGTTGACCAAGATACAGCTTCTGCAATATCGGATTCAGATGATATTCGCTTGGAAACTAATCCAAAACGAAGGCGAACATTGACTTCTGTTAACTCTATACAAAATGATAATATTGAACCAGACGAGGAATGTATTAATGATTTTCTCGATAAATGCACAGATGATgccGAGGCAAGGTTGGCCGCCCGCAGACAAGCCCGGGCAGAGGCGCGAGAGATTCGTATGCGAGAGCTGGAGCGACAACAACGCGAACAAGAAGAAAATGCAGACCGCGCGTATGATATGCTCACCGAACCATTAGCGCGTACTCCACGCGCTAGTGCCATCAGCAGTATCGGAACTACCCGGACTCCTACAGCTGTGGGACTCAACAACAGCGCATATCTATCCAGTCGTCGGAGCTCGGAGGACTCCCTAGAAGATGGCGGCAGTATTCGAGACGTTCGAcTTGAGCTCAAAGAGTTGGAAGATAAATTTCGTAAAGCAATGATTGCTAATGCTCAGCTTGACAATGACAAAGCTTCCCAAACATATCAACTCGAATTACTAAAAGATAGAATAGAAGAATTAGAAGAAGAGCATACGCAACTTAAACGAGAACACCGTGAAACGTGTCGTGAGCATGAGCAACTGAAAAGAGTTGCAGTGCGCTTAAAAGAAGATCTAGCCTGCTACAAAACGGAACTTGAAGAACGGGATCGGTTAATCGCTGAAAAAGGACTGGTTATTGTTGGCGAAGAGATACCTGAAGATGAATTGAACGACAGTGGCGATGCGTCCACGGTGCGGACTCCAAAGAAAGCTTTAGTTAGTATAGAAAATGCCGAGTTACTCGAAAACGCTGGCGAAGGAAGCTTAGATGTACGGTTAAAACGATTTGCTGAAGAGAAAAGAGATCTAATGGATCAATTAAGTCATATTAGATTAGAATTGGAAGAAGAACGAAGCAGACGAAAACGGAGAACGAGTTCGATTACTGCAAACGCGTCGCTTCAAAACGGCCCAAGTTTAGAGTTCGATACCGTAGATGTTATTGATGTGCAAcGAGAAGCCAATAAACAATTGGCCGATTACAAATTCAGATTGCAAAAATCTGATCAAGATATTGCCACATTACAAGCGACTGTTGCGCGCCTGGAAAGCCAAGTTATCCGGTATAAATCGTCGGCTGAAGCATCTGAAAAAGCAGAAGACGAGCTTAAAGTCGAAAAAAGAAAACTACAACGTGAATCCCGTGAATCGCTAAGTAGAGTCGAAGAGTTGGAAACGGCAAATAATCACCTATTAAAACGGCTTGATAAGTTAAAAAATGCCAAATCAGCGCTTCTCAAAGAACTCTGA
- Protein Sequence
- MSESSNMGSVTSDTNNENDVITIEGATEDEFNDCDVLDEVDQDTASAISDSDDIRLETNPKRRRTLTSVNSIQNDNIEPDEECINDFLDKCTDDAEARLAARRQARAEAREIRMRELERQQREQEENADRAYDMLTEPLARTPRASAISSIGTTRTPTAVGLNNSAYLSSRRSSEDSLEDGGSIRDVRLELKELEDKFRKAMIANAQLDNDKASQTYQLELLKDRIEELEEEHTQLKREHRETCREHEQLKRVAVRLKEDLACYKTELEERDRLIAEKGLVIVGEEIPEDELNDSGDASTVRTPKKALVSIENAELLENAGEGSLDVRLKRFAEEKRDLMDQLSHIRLELEEERSRRKRRTSSITANASLQNGPSLEFDTVDVIDVQREANKQLADYKFRLQKSDQDIATLQATVARLESQVIRYKSSAEASEKAEDELKVEKRKLQRESRESLSRVEELETANNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01225682;
- 90% Identity
- iTF_01040872; iTF_01040123; iTF_00873043;
- 80% Identity
- -