Pnig044902.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947425015.1
- Location
- OX380335.1:38580775-38586065[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-114 1.8e-109 367.2 35.7 1 300 101 411 101 411 0.91 2 2 0.0099 5.3e+02 1.2 4.7 192 237 440 484 412 486 0.60
Sequence Information
- Coding Sequence
- ATGAATGAGAAAGAAATGGGTGGTGTTAGTAGTGACCAGTGTAAAAATAAAAAACCTGAAGTTGTCCAAATTGAAGGTGTGACTGAAGATGAAGTCAATGATTTTGATGATGAACCGCAAGATAATTTAAATGATAGTGGCCACCAGGATGGTGATGATTCATCAGAAGATGAAAGTGTTGAAGATTCAGATCGTCTTTCAAAAAGAAGACGAACGCTTAGTCGAGTTGATATTAATGAAGATGTAGAAGAAGTAGATAATGAATGCATTAATAATTTTTTGGATAAATGTACAGATCAAGCAGAGGCGCGTCTAGCAGCACGTAGACAAGCCCGTGCCGAGGCCCGCGAGATTCGCATGCGAGAGCTAGAGCGGCAACAGCGTGAGCAGGAGGAGAATGCTGACCGAGCTTACGACATGCTGGCGGAGCCGCTGACACGTAGCACTCGGTCCACGTCCCTGACGCCGCATCGTATCGTTGCCGCCACGGGACTCGCCAACAGCGCCTACCTCTCCAGCCGACGCAGCTCCGAGGACTCGCTTGAGGATGGCGGGAGTCTTCGCGATGTCCGGCATGAGCTCAAGGAGCTGGAGGACAAATTCCGCAAAGCAATGATAGCAAACGCTCAACTAGATAACGATAAGGCCGCACAAACTTACCAATTAGAATTGCTAAAGGATCGAATAGAAGAACTGGAAGAAGAATACTCCCAACTAAAACGAGAACACAGAGAGACTTGTCGGGAACATGACCAACTGAAGCGTGTGTCGGTTAGGTTAAAAGAAGAACTAGCCGCTTATAAAACTGAACTGGAAGAACGAGACAGACTTATAGCGGAAAAAGGATTGGTGATAGTTGGTGAAGAAGTTACAGAGGAAGATGAGAATGATGCTAATTCCACGCCCCGAACTCCAAAGAAAGCTTTAGTTAGTATAGAAAATGCTGAGCTACTGGAAAATGCTGGAGAAGGAAGTTTAGATGTGCGGTTAAAACGCTTCGCAGAAGAAAAGCGCGACCTTATGGATCAATTAAGCCACCTTAGATTAGAATTAGAAGAAGAGCGCAGCAGAAGAAAACGTAGAACGAGTAATATTACAGCAAATGCTTCCTTACAGAACGGACCGAGTTTAGAATCAGATACATTAGATGTCATCGATGTTCAAAGAGAAGCAAATAAACAGTTAGCTGACTACAAATTCCGTCTCCAGAAATCAGAACAAGATATTGCAACGTTGCAAGCAACAGTAGCAAGATTAGAGAGTCAAGTTATTCGCTATAAATCCGCTGCGGAAGCTTCTGAGAAAGCAGAGGATGAACTCAAAGTCGAGAAAAGAAAACTACAAAGAGAGGCTCGAGAATCACAAAGCAGGGtagaagaactagaaaccgcaaataatcatcttcagaaaagactcgagaaactaaaaaatgcaaaatctgcattacttaaagaaCTCTGA
- Protein Sequence
- MNEKEMGGVSSDQCKNKKPEVVQIEGVTEDEVNDFDDEPQDNLNDSGHQDGDDSSEDESVEDSDRLSKRRRTLSRVDINEDVEEVDNECINNFLDKCTDQAEARLAARRQARAEAREIRMRELERQQREQEENADRAYDMLAEPLTRSTRSTSLTPHRIVAATGLANSAYLSSRRSSEDSLEDGGSLRDVRHELKELEDKFRKAMIANAQLDNDKAAQTYQLELLKDRIEELEEEYSQLKREHRETCREHDQLKRVSVRLKEELAAYKTELEERDRLIAEKGLVIVGEEVTEEDENDANSTPRTPKKALVSIENAELLENAGEGSLDVRLKRFAEEKRDLMDQLSHLRLELEEERSRRKRRTSNITANASLQNGPSLESDTLDVIDVQREANKQLADYKFRLQKSEQDIATLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREARESQSRVEELETANNHLQKRLEKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01225682;
- 90% Identity
- iTF_01225682;
- 80% Identity
- -