Hruf000715.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951394225.1
- Location
- OX596274.1:15735496-15746581[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.75 5.1e+04 -4.9 4.4 51 96 31 77 9 80 0.67 2 4 1.1e-113 7.5e-109 365.5 33.9 1 300 99 406 99 406 0.92 3 4 0.0024 1.6e+02 3.2 2.4 121 171 405 455 404 459 0.92 4 4 0.088 6e+03 -1.9 5.5 135 232 440 474 425 481 0.51
Sequence Information
- Coding Sequence
- ATGAATGAAGAGAACATGGGTGGTACAACAAGTGATCAAAGCAAGACCAAAAATCCAGAATCTCACATCGAATCCTTGCAAATCGAAGGCGTAACACAGGATGAAACAGAAGATTGCAATACTAATGAGAGCCTTAACGATAGTGGGCATCAGGACTGTGATTCCGATGAAAGTGCGGAAAGTAATTCAGAGAGGTTATCCAAACGTAGACGCACGCTCAGTGAAGTAGAACCAGAAGACAATGAAGAAAACAATGAATGCATTAACAATTTTTTGGATAAATGTACAGATCAaGCAGAAGCCCGGCTGGCAGCCCGGAGACAAGCCCGTGCTGAGGCCCGAGAGATTCGCATGCGAGAGCTGGAGCGACAACAGCGCGAGCAAGAGGAGAATGCAGATCGTGCGTACGACATGCTGGCGGAGCCGCTAGCTCGCAGTGGGCGCTCCGCATCCACCACACCTCACCGTTCCGCCAATACGGGGCTCACTAACTCCTACCTCTCCAGCCGCCGGAGCTCGGAGGACTCGCTCGAAGATGGGGGCAGTCTCCGAGATGTCCGGCATGAGCTCAAAGAGCTGGAAGACAAATTCCGAAAAGCAATGATAGCCAATGCTCAATTAGATAACGATAAAGCTGCACAGACTTACCAATTAGAACTCCTGAAAGATCGAATAGAAGAGCTAGAGGAAGAGTATTCCCAACTAAAACGAGAGCACAGGGAAACGACACGGGAACATGATCAACTCAAACGGGTGTCAGTTAGGTTAAAAGAAGATCTAGCTGCAGTTAAATTTGAATTGGACGAAAGAGATCGACTTATAGCGGAGAAAGGATTAGTGATAGTTGGAGAAGTAGCAGATGAAGATGAAAATGATGGAGAAAATAACACGCCGCGTACCCCAAAGAAAGCTTTAGTTAGTATAGAAAATGCAGAGTTGTTGGAAAATGCTGGGGAAGGAAGTTTAGATGTACGGTTAAAGCGCTTCGCCGAAGAAAAACGGGACCTTATGGATCAATTAAGTCATCTTAGATTAGAATTAGAGGAAGAAAGAAGCAGAAGGAAACGTAGAACAAGCTCTATAAACAATGTTTCCTTACAAAACGGGCCTAGTTTAGAAGCTGATGGCTTAGATGTTATAGATGTTCAaagagaagcaaataaacagttagcAGATTATAAATTCCGTCTTCAAAAGTCAGAACAGGACATAGCAACGTTGCAGGCGACGGTGGCAAGGTTAGAAAGTCAAGTTattcgctataaatcagctgcAGAAGCTTCGGAAAAAGCCGAAGACGAACTAAAAGTTGAAAAACGAAAACTGCAGAGAGAGTTTCGAGAATCCCAAGGCAGAGTAGAAGAACTAGAAACAGCAAACACTCATCTTCAACGAAGACtcgaaaaactaaaaaatgCAAAATCTGCGTTACTCAAAGAACTCTGA
- Protein Sequence
- MNEENMGGTTSDQSKTKNPESHIESLQIEGVTQDETEDCNTNESLNDSGHQDCDSDESAESNSERLSKRRRTLSEVEPEDNEENNECINNFLDKCTDQAEARLAARRQARAEAREIRMRELERQQREQEENADRAYDMLAEPLARSGRSASTTPHRSANTGLTNSYLSSRRSSEDSLEDGGSLRDVRHELKELEDKFRKAMIANAQLDNDKAAQTYQLELLKDRIEELEEEYSQLKREHRETTREHDQLKRVSVRLKEDLAAVKFELDERDRLIAEKGLVIVGEVADEDENDGENNTPRTPKKALVSIENAELLENAGEGSLDVRLKRFAEEKRDLMDQLSHLRLELEEERSRRKRRTSSINNVSLQNGPSLEADGLDVIDVQREANKQLADYKFRLQKSEQDIATLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREFRESQGRVEELETANTHLQRRLEKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01225682;
- 90% Identity
- iTF_00766544;
- 80% Identity
- -