Hrub009416.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963082715.1
- Location
- OY720448.1:103216854-103235420[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 9.2e+04 -6.6 6.6 45 96 20 72 4 76 0.64 2 4 1.8e-113 1.6e-108 364.9 33.7 1 300 94 401 94 401 0.91 3 4 0.002 1.9e+02 3.5 2.2 121 171 400 450 399 455 0.92 4 4 0.072 6.6e+03 -1.6 5.3 135 232 435 469 419 476 0.51
Sequence Information
- Coding Sequence
- ATGGGTGGAACAACAAGTGATCAAAGCAAGACCAAAAGTTCAGAATCTGCCATCGAATCCTTGCAAATCGAAGGCGTAACACAGGATGAAACAGAAGATTGCAAAACTAATGAGAGCCTAAACGATAGCGGGCATCAGGACTGTGATTCCGATGAAAGTGCGGAAAGCAATACGGAGAGGTTATCCAAACGTAGACGCACACTCAGTGAAGTCGAACTAGAAGACAATGAAGAAAACAATGAATGCATTACCAATTTTTTGGATAAGTGTACAGATCAaGCAGAAGCCCGGCTGGCAGCCCGGAGACAAGCCCGTGCTGAGGCCCGAGAGATTCGCATGCGAGAGCTGGAGCGACAACAGCGCGAGCAAGAGGAGAATGCAGATCGCGCGTACGACATGCTGGCGGAGCCGCTAGCTCGCAGTGGGCGCTCCGCATCCACCACACCACACCGATCCACCAACACGGGGCTCACCAACTCCTATCTCTCCAGCCGCCGGAGCTCGGAGGACTCGCTCGAAGATGGGGGCAGTCTGCGAGATGTTCGGCATGAGCTCAAAGAGCTGGAAGACAAATTCCGAAAAGCAATGATAGCTAATGCTCAATTAGATAACGATAAAGCTGCACAAACTTACCAATTAGAACTCCTGAAGGATCGAATAGAAGAGCTAGAGGAAGAATATTCCCAACTAAAACGAGAGCACAGGGAAACGACACGGGAACATGATCAACTCAAACGGGTGTCAGTTAGGTTAAAAGAAGACCTAGCTACAGTTAAATTTGAATTGGACGAAAGAGATCGACTTATAGCGGAGAAAGGATTAGTGATAGTTGGAGAAGTAGCAGATGAAGATGAAAATGATGGAGAAAATAACACGCCTCGTACCCCAAAGAAAGCTTTAGTTAGTATAGAAAACGCAGAGTTGTTGGAAAATGCTGGGGAAGGAAGTTTAGaTGTACGGTTAAAGCGCTTCGCCGAAGAAAAACGGGACCTAATGGATCAATTAAGTCATATTAGATTAGAATTAGAGGAAGAAAGAAGCAGAAGGAAACGTAGAACTAGCTCTATAAACAATGTTTCCTTACAAAACGGGCCTAGTTTAGAAGCTGACGGCTTAGATGTTATAGATGTTCAAAgaGAAGCAAATAAACAGTTAGCAGATTATAAATTCCGTCTTCAAAAGTCAGAACAAGATATAGCAACGTTGCAGGCGACGGTGGCAAGGTTAGAAAGTCAAGTTATTCGCTATAAATCCGCTGCAGAAGCTTCGGAAAAAGCAGAAGACGAACTAAAGGTTGAAAAACGAAAACTGCAGAGAGAGtTTCGAGAATCCCAAGGTAGAGTAGAAGAACTAGAAACAGCAAACACTCATCTTCAACGAAGACTCGAAAAACTAAAAAATGCAAAATCTGCGTTACTCAAAGAACTCTGA
- Protein Sequence
- MGGTTSDQSKTKSSESAIESLQIEGVTQDETEDCKTNESLNDSGHQDCDSDESAESNTERLSKRRRTLSEVELEDNEENNECITNFLDKCTDQAEARLAARRQARAEAREIRMRELERQQREQEENADRAYDMLAEPLARSGRSASTTPHRSTNTGLTNSYLSSRRSSEDSLEDGGSLRDVRHELKELEDKFRKAMIANAQLDNDKAAQTYQLELLKDRIEELEEEYSQLKREHRETTREHDQLKRVSVRLKEDLATVKFELDERDRLIAEKGLVIVGEVADEDENDGENNTPRTPKKALVSIENAELLENAGEGSLDVRLKRFAEEKRDLMDQLSHIRLELEEERSRRKRRTSSINNVSLQNGPSLEADGLDVIDVQREANKQLADYKFRLQKSEQDIATLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREFRESQGRVEELETANTHLQRRLEKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01225682;
- 90% Identity
- iTF_00768297; iTF_01104374;
- 80% Identity
- -