Pcha009426.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_002278615.1
- Location
- CM008230.1:12926987-12932819[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-112 2.7e-108 362.0 37.1 1 300 92 402 92 402 0.90 2 3 0.0062 1.3e+02 1.9 2.6 121 171 401 451 400 454 0.88 3 3 0.034 7.2e+02 -0.5 5.5 193 238 432 476 414 477 0.65
Sequence Information
- Coding Sequence
- atgaatgAACCAAATATGGGTGGTGTAAATAGTGAATTTAATGATACCATAGACTCAGTGACTTCAGTTGATATTGAGGGAGTTACAGAGGACGAGATAAACGATTACGATGATGAAATCAGTGAAATATTGGGCGACGATGATTCGTCGTTATTAAATGatgaaattgtttcaaaaaagaGACGAATTGTTAGTAATACAAATGCACAAGATGCTGCTGAGGATTCTGATAATGAATGCATTAATGCTTATTTAGATATATGCACTGGTGATgcGGAAGCTCGATTGGCCGCACGCAGACAAGCTCGCGCGGAAGCGCGAGAAATTCGAATGCGAGAACTGGAGCGCCAACAACGAGAACAAGAAGAAAATGCAGATCGTGCCTATGATATGCTTGCAGAACCCCTGACAAGAAGTTCACGTACCACCAGTAGTGCTCTTACACCAAGATCCGCAGCCGTGGGGTTGAATAATAGTGCTTATCTTTCCAGTCGAAGGAGCTCGGAGGACTCCCTCGAAGATGGCGGCAGTCTTAGAGATGTACGGcatgAGCTCAAAGAGTTGGAAGATAAATTTAGGAAAGCAATGATTGCAAATGCACAATTAGATAATGATAAAGCAGCGCAGACTTATCAATTAGAATTGTTAAAAGATCGAATAGAGGAATTAGAAGAAGAATTTTCACAGTTAAAAAGAGAACATAGAGAAACATGTAGGGAAcatgaacaattaaaaagaGTATCTGTTAGATTAAAAGAAGAATTAGCTGCATATAAAACGGAATTAGAAGAACGTGACAGATTAATTGCAGAAAAAGGATTAGTTATAGTTGGTGAAGAAGTAACGGAAGATCAAAATGATGCAGATTCAAGCACAATTCGTACTCCAAAGAAAGCTTTAGTTAGTATAGAAAATGCAGCATTATTAGAAAATGCCGGGGAAGGAAGTTTAGATGTACGATTAAAACGTTTTGCTGAAGAAAAACGTGAACTAATGGATCAATTAAGTCATCTTAGATTAGAATTAGAAGAAGAACGCAGTAGAAGAAAACGACGAACTAGTTCTATAACTGCAAATGCTTCTTTGCAAAATGGACCTAGTTTAGAATCAGATACATTAGATGTTATTGATGTTCaaagagAAGCAAATAAGCAGTTAGCCGACTACAAGTTCCGTTTGCAAAAGTCTGATCAAGATATTGCAACATTACAAGCAACAGTTGCAAGGTTAGAAAGCCAAGTCATTCGATATAAATCTGCGGCAGAAGCTTCTGAAAAGGCGGAAGACGaattaaaagtagaaaaaagaaaactgcAGCGAgaaGCAAGAGAGTCACAAAGCAGAGTCGAAGAATTAGAAACAGCTAATACACATTTGCAACGAAGACttgataaactaaaaaatgctAAATCTGCTTTACTTAAAGAACTTTGA
- Protein Sequence
- MNEPNMGGVNSEFNDTIDSVTSVDIEGVTEDEINDYDDEISEILGDDDSSLLNDEIVSKKRRIVSNTNAQDAAEDSDNECINAYLDICTGDAEARLAARRQARAEAREIRMRELERQQREQEENADRAYDMLAEPLTRSSRTTSSALTPRSAAVGLNNSAYLSSRRSSEDSLEDGGSLRDVRHELKELEDKFRKAMIANAQLDNDKAAQTYQLELLKDRIEELEEEFSQLKREHRETCREHEQLKRVSVRLKEELAAYKTELEERDRLIAEKGLVIVGEEVTEDQNDADSSTIRTPKKALVSIENAALLENAGEGSLDVRLKRFAEEKRELMDQLSHLRLELEEERSRRKRRTSSITANASLQNGPSLESDTLDVIDVQREANKQLADYKFRLQKSDQDIATLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREARESQSRVEELETANTHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01225682;
- 90% Identity
- -
- 80% Identity
- -