Oard050270.1
Basic Information
- Insect
- Ophonus ardosiacus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_943138245.1
- Location
- CALPBP010002542.1:164103-174474[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-113 1.2e-108 364.6 32.7 1 300 99 407 99 407 0.92 2 3 0.002 1.1e+02 3.5 2.2 121 172 406 457 405 463 0.92 3 3 0.073 4.2e+03 -1.6 5.1 135 231 441 474 428 482 0.52
Sequence Information
- Coding Sequence
- ATGAATGCAGACAATATGGGTGGCACAACAAGTGATCAAAGCAAGTCCAAAAGTCCAGAATCTCACATCGAATCCGTGCAAATCGAGGGCGTAACACAGGATGAAACTGAAGATTTCAAAACTATTGAGAGCCTTGACGATAGCGGGCATCAGGACTGTGATTCTGATGAAAGTGCGGAAACCAATCCAGAGAGGTTATCCAAACGTAGACGCACGCTCAGTGAAATAGAACCAGAAGACAATGAAGAAAACAATGAATGcattaccaattttttggatAAGTGTACAGATCAaGCAGAAGCCCGGCTGGCAGCCCGGAGACAAGCCCGTGCTGAGGCCCGAGAGATTCGCATGCGAGAGCTGGAGCGACAACAGCGCGAGCAAGAAGAGAATGCAGATCGCGCGTACGACATGCTGGCGGAGCCGCTAGCTCGCGGTGGGCGCTCCGCATCCACCACACCACATCGATCCGCCAACACGGGACTCACCAACTCCTACCTCTCCAGCCGCCGGAGCTCGGAGGACTCGCTCGAAGATGGGGGCAGTCTGCGAGATGTCCGGCATGAGCTCAAAGAGCTGGAAGACAAATTCCGAAAAGCAATGATAGCCAATGCTCAATTAGATAACGATAAAGCAGCACAGACTTACCAATTAGAACTCCTAAAGGATCGAATAGAAGAGCTAGATGAAGAATATTCCCAACTAAAACGAGAGCACAGGGAAACGACTCGGGAACACGATCAACTCAAACGGGTGTCAGTCAGGTTAAAAGAAGACCTAGCTGCAGTTAAATTTGAATTAGATGAAAGAGATCGACTTATAGCGGAAAAAGGATTAGTGATAGTTGGAGAAGCAGTGACAGATGAAGATGAAAATGATGGAGAAAATAACACGCCGCGTACCCCAAAGAAAGCTTTAGTTAGTATAGAAAACGCAGAGTTGTTGGAAAATGCTGGGGAAGGAAGTTTAGATGTACGGTTAAAGCGCTTCGCCGAAGAAAAGCGGGACCTAATGGATCAGTTAAGTCATCTTAGATTAGAATTAGAGGAAGAAAGAAGCAGAAGGAAACGTAGAACTAGCTCTATAAACAATGTTTCCTTACAAAATGGGCCTAGTTTAGAAGCTGACGGCTTAGATGTTATAGATGTTCAAaGAGAAGCAAATAAACAGTTAGCAGATTATAAATTCCGTCTTCAAAAGTCAGAACAAGACATAGCAACGTTGCAGGCGACGGTGGCAAGGTTAGAAAGTCAAGTTATTCGCTATAAATCAGCTGCAGAAGCTTCGGAAAAAGCCGAAGACGAACTAAAGGTTGAAAAACGAAAACTGCAGAGAGAGtttcGAGAATCCCAAGGTAGAGTAGAAGAACTAGAAACAGCAAACACTCATCTTCAACGAAGActcgaaaaactaaaaaatgcaAAATCTGCGTTACTCAAAGAACTCTGA
- Protein Sequence
- MNADNMGGTTSDQSKSKSPESHIESVQIEGVTQDETEDFKTIESLDDSGHQDCDSDESAETNPERLSKRRRTLSEIEPEDNEENNECITNFLDKCTDQAEARLAARRQARAEAREIRMRELERQQREQEENADRAYDMLAEPLARGGRSASTTPHRSANTGLTNSYLSSRRSSEDSLEDGGSLRDVRHELKELEDKFRKAMIANAQLDNDKAAQTYQLELLKDRIEELDEEYSQLKREHRETTREHDQLKRVSVRLKEDLAAVKFELDERDRLIAEKGLVIVGEAVTDEDENDGENNTPRTPKKALVSIENAELLENAGEGSLDVRLKRFAEEKRDLMDQLSHLRLELEEERSRRKRRTSSINNVSLQNGPSLEADGLDVIDVQREANKQLADYKFRLQKSEQDIATLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREFRESQGRVEELETANTHLQRRLEKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01225682;
- 90% Identity
- iTF_00766544;
- 80% Identity
- -