Basic Information

Insect: Plodia interpunctella
Gene Symbol: -
Assembly: GCA_027563975.2
Location: CM050476.1:2215034-2217499[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.7e-09 5.4e-06 26.3 0.2 4 40 72 108 69 113 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.7e-09	5.4e-06	26.3	0.2	4	40	72	108	69	113	0.87

Sequence Information

Coding Sequence: atggccATAACCAATAACCTAACACCTTCAGACAGATATTCTAGATTAGCAAGGGGCCGTGCCGCGAGCGTGTTGGAACCTGCAGTCGAAAACAACCACGACGCGGAGCGCAcgcttgtttttataaaattctggAAGAGTAAACATAACATCATGGAAAACGAATCACCAGCTACTAccacaaagaaaaaaagggCTCAGTGGACCTCGCAACAGATGGAAAACGCTGTAAAAATGGTAGAAAGGGGTATATTATCTACATATGCTGCTGCAGCTAGATACAACATCCCAAGAAGAACCCTACGCAACCATCTAAAGAGTGGTTCGACTACACGAAAACTAGGTCGGTCGGCTATATTGACTACAGAACAAGAAGCTGGACTTGTCAGAAGAATAATTCGTTTGGCTGATGTTGGAGTACCGATGACTTCAAAAATGTTGCGCGTACAGGCTTTCTCATTctgtaaaattaagaaaattccAAACACTTTCAATGATGCCAAAAATGCAGCGGGGAAAAAATGGTTGAGATTATTCCTCAAACGACACCCTGAATTAGCACGTCGTAAAGCACAGATGATGAATCCAGCTCGTGCTCAAAAACTGAATAAAGATATTGTTAGAGATCACTTTTCCAAATACAAAAGCGTGCTGGTTAAACTTGGAATGGAACATAAACCTGAAAGCATTTACAACATTGATGAGAAAAATTGTCGCATATCTTTGCACCATCAGCAGGAAGTTCTGACAGCCAAAGGGAGAAAGAGAGTTCATCAAATAGCGAATGAGCATGCTGAAAGTGTGACTGTGGTAGGCTGCGGAAATGCTATAGGATCGGCTATTCCGCCAATGATACTATTTAAAGGCAAGCGACTAAAGCCAGAATACCAAGATAATTTACCACCAGGGTCTCTGGTGAAGATGACGCCAAAAGGAAGTATGACAACAGAAACATTCATAGAGTTTATTaatcatttgaataaatacagAACATCAGGGCCATGTCTCCTTATATTTGATGGTGCAAAATGCCACTTGGACTTTACTATTGTCGAGGAAGCTGAGAAATGTGGCATCACTTTATATTGTCTTCCGTCAAATACCACTCACGAATTACAGCCCATGGATAAATCCGTTTATCGTTCTTTTGAGCACCATTGGGACCAAGAGTTGATTAAATACGTCAGTCAGCATCCGGAACGAACCGTTAACAAGACAAGCTTCAATGTCATTCTCTCACAAGTATGGCCGAAATGTATGACTATTACCAATATCTCGAATGGGTTTCGCGCTACAGGGTTGTATCCATATAACCCAGATGCTGTACCTGAAGAGGCGTTTGCGCCCTCTGCGTTGTCAGAACTTCCAATACCTACAAACAGTGAGAATATGGCTGTCTTATCCGATGAAGCAAGACAAACGGGAGAACAAGAGATTTCAACTGCAAATGTGGAAGATTCAGATGGCTCAGGCACAGATACTGAGAATTTGCCACTGTCCTTGCTCTTTAAAAACAACCTGAATGCTGAAACTCCACATAAGATAGACAATCAATCCACCACGTGTGAGATTCATGAATTTTTACCAACTCCTAAGTTTAAAGTTAAAGCGACTGCTCCACGCAAGAAGTCTCTGAATTACAGGGCTCAAGAGGTAACAAAAGATTTGTTTGGTGACAAAGCTACGAATTCCACACCACAGACTACTGTACCATCGTCAAGAGCAGAAGCTGTTCCGGGCACTTCTTCAATGATAATGATTGACACAAAGACACCAAAATCAACGTCAGTCACTGGCCGTACATCTGCACAACCTGCAGTCGCTGCAACGAGGACCGCTTCTTTGACAGCAGATAAGCTTACGGGATCAAAACCAAAACGTCACGATAAGAAATCTTCTTGGTACTGTCCAGCTTGTAAAGAAGATCGAGTTGATGATATGCGACAATGTCTTACTTGTGGCGTTTGGTATCATGAGCTGTGTGTTGGACTCACATcaactgataaaatattttactgttctggagattgtttaaaaaaaaagttgaaaaaggctgattaa
Protein Sequence: MAITNNLTPSDRYSRLARGRAASVLEPAVENNHDAERTLVFIKFWKSKHNIMENESPATTTKKKRAQWTSQQMENAVKMVERGILSTYAAAARYNIPRRTLRNHLKSGSTTRKLGRSAILTTEQEAGLVRRIIRLADVGVPMTSKMLRVQAFSFCKIKKIPNTFNDAKNAAGKKWLRLFLKRHPELARRKAQMMNPARAQKLNKDIVRDHFSKYKSVLVKLGMEHKPESIYNIDEKNCRISLHHQQEVLTAKGRKRVHQIANEHAESVTVVGCGNAIGSAIPPMILFKGKRLKPEYQDNLPPGSLVKMTPKGSMTTETFIEFINHLNKYRTSGPCLLIFDGAKCHLDFTIVEEAEKCGITLYCLPSNTTHELQPMDKSVYRSFEHHWDQELIKYVSQHPERTVNKTSFNVILSQVWPKCMTITNISNGFRATGLYPYNPDAVPEEAFAPSALSELPIPTNSENMAVLSDEARQTGEQEISTANVEDSDGSGTDTENLPLSLLFKNNLNAETPHKIDNQSTTCEIHEFLPTPKFKVKATAPRKKSLNYRAQEVTKDLFGDKATNSTPQTTVPSSRAEAVPGTSSMIMIDTKTPKSTSVTGRTSAQPAVAATRTASLTADKLTGSKPKRHDKKSSWYCPACKEDRVDDMRQCLTCGVWYHELCVGLTSTDKIFYCSGDCLKKKLKKAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00783396; iTF_00931251; iTF_01152967; iTF_00822952; iTF_00822951; iTF_00822953; iTF_00822954; iTF_00822955; iTF_00205065; iTF_00985034; iTF_00801772; iTF_00821740; iTF_00821738; iTF_00821739; iTF_01161294; iTF_00717713; iTF_00821747; iTF_00049839; iTF_00171702; iTF_00147306; iTF_00171700; iTF_00171701; iTF_00171703; iTF_00709168; iTF_00710146; iTF_01363047; iTF_01363048; iTF_01363049; iTF_00709169; iTF_00709170; iTF_00709171; iTF_00709172; iTF_00709173; iTF_00790199; iTF_00790200; iTF_00790201; iTF_00795651; iTF_01197669; iTF_00820013; iTF_00819105; iTF_01429874; iTF_00428952; iTF_00906989; iTF_00695471; iTF_00954384; iTF_01283312; iTF_01283313; iTF_00076466; iTF_00318807; iTF_01338678; iTF_00908759; iTF_01220599; iTF_01220596; iTF_00038681; iTF_00038678; iTF_00044441; iTF_00238757; iTF_00985992; iTF_00985993; iTF_00695476; iTF_00032854; iTF_00032856; iTF_01335871; iTF_00809061; iTF_01367813; iTF_00973711; iTF_00418928; iTF_00809050; iTF_01338684; iTF_01208121; iTF_00809058; iTF_00809059; iTF_00809060; iTF_00238739; iTF_00717712; iTF_01166621;
90% Identity: iTF_00032856;
80% Identity: -