Pmus013748.1
Basic Information
- Insect
- Pelosia muscerda
- Gene Symbol
- -
- Assembly
- GCA_963691645.1
- Location
- OY829111.1:15982922-15987366[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-08 1.8e-05 24.9 0.2 4 37 63 96 60 102 0.92
Sequence Information
- Coding Sequence
- ATGTTGGACTATTCACTTCTGCAAGTGCTTCGTGCCGCGAACGTGTTGCAACCTGCAGTCGGAAACAACAACGACGCGAAGCGCaagcttatttttataaaattctggCTCAGTAAacaTAATATCATGGACAACGAATCATCAGCTTCTACCACAAAGAAAAAAAGGGCTCAATGGACTTCGCAACAAATGGAAAACGCTGTTAAAATGGTAGAAAGAGGTATGTTATCTACATATGCTGCGGCAGCCAGATACAACATCCCGCGAAGAACCCTACGCAACCATCTAGCGAGTGGGTCGACTACGTGGAAGCTAGGTCGGTCTGCTATATTGACTACAGAACAAGAAGCTGGACTTGTCAGAAGAATCATTCGTTTGGCTGATGTTGGAATGCCGTTGACATCAAAAATGTTGCGCGTACAGGCTTATTCATTctgtaaaattaagaaaattccaAACACTTTCAATGATAGCAAAAACACAGCGGGTAAGAAATGGTTAAGGTTATTTCTCAAAAGACACCCTGAATTAGCACGTCGTAAAGCACAGATGATGAATCCAGCTCGTgctcaaaaattaaataaagatattgttaCCGATCACTTTTCCAAATACAAAAGTGTACTAGATAGACTTGGAATTGAACATAAACCTGAAAGCATCTACAACATTGACGAAAAAAATTGTCGCATATCTTTACACCATCAGCAGGAAGTTCTGACAGCCAAAGGGAGAAAAAGAGTGCATCAAATAGCGAATGAGCACGCTGAAAGCGTGACAGTAGTAGGCTGCGGAAATGCCATAGGATCAGCTATTCCTCCAATGATATTGTTCAAAGGCAAGAGACTAAAGCCAGAATTTCAAGACAATTTACCTCCAGGCTCTATGGTGAAGATGACGCCAAAAGGAAGTATGACGACAGAAACTTTCATAGAGTTTATTAACCATTTGCATAAATACAGAACATCAGGGCCATGTCTCCTCATATTTGATGGTGCAAAATGCCACCTGGACTTTAGTATTGTCGACGAAGCTGAGAAATGTGGCATTACTTTATATTGTCTTCCGTCAAATACTACGCATGAATTACAGCCCATGGATAAATCTGTTTATCGTTCTTTTGAGCATCATTGGGACCAAGAGTTGATTAAATACGTCAGTCAGCATCCTGAACGAACCCTTAACAAGACGAGCTTCAATGTCATTCTCTCACAAGTATGGCCAAAATGTATGACTATTACCAATATCTCGAATGGGTTTCGCGCTACTGGGCTATATCCATATAACCCAGATGCTATTCCTGAAGAGGCGTATGCGCCCTCTGCTTTGTCAGAACTTCCAAATCCTACAAATAGTGAGAATATTGCTGTCTTATCTGATGAATTGGTGGAACAAGAGCTTTCAACTGCAAATGTGGAAGATTCAGATAGGTCAGGCTCAGATACTGAGAATTTGCCACTGTCTTTGCTCTCAAGAAACAATCCGAATACTGGAACTCCACAGAAGATAGACAATCAATCAAACACGTGTGAGATTCATGAATTTTTACCAACGCCTAAGTTTAAAGTTGTAGCGACTGCTCCACGCAAGAAGTCTCTGAATTACAGGGCTCAAGAGGTAACAAAAGATTTATTTGGTGACAGTACGACAAATTCCAGATCACAGATTACTgtaccagggcttgaaaccggtttagaaaataccggttaa
- Protein Sequence
- MLDYSLLQVLRAANVLQPAVGNNNDAKRKLIFIKFWLSKHNIMDNESSASTTKKKRAQWTSQQMENAVKMVERGMLSTYAAAARYNIPRRTLRNHLASGSTTWKLGRSAILTTEQEAGLVRRIIRLADVGMPLTSKMLRVQAYSFCKIKKIPNTFNDSKNTAGKKWLRLFLKRHPELARRKAQMMNPARAQKLNKDIVTDHFSKYKSVLDRLGIEHKPESIYNIDEKNCRISLHHQQEVLTAKGRKRVHQIANEHAESVTVVGCGNAIGSAIPPMILFKGKRLKPEFQDNLPPGSMVKMTPKGSMTTETFIEFINHLHKYRTSGPCLLIFDGAKCHLDFSIVDEAEKCGITLYCLPSNTTHELQPMDKSVYRSFEHHWDQELIKYVSQHPERTLNKTSFNVILSQVWPKCMTITNISNGFRATGLYPYNPDAIPEEAYAPSALSELPNPTNSENIAVLSDELVEQELSTANVEDSDRSGSDTENLPLSLLSRNNPNTGTPQKIDNQSNTCEIHEFLPTPKFKVVATAPRKKSLNYRAQEVTKDLFGDSTTNSRSQITVPGLETGLENTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220597;
- 90% Identity
- iTF_00954384;
- 80% Identity
- -