Sbip015261.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- -
- Assembly
- GCA_949320045.1
- Location
- OX439459.1:2557957-2560801[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-08 2e-05 24.6 0.2 4 42 67 106 64 109 0.87
Sequence Information
- Coding Sequence
- ATGACGCTAAGATCTGGCATTATCACTTCAGCGGGCCGTGCCGCGACCGCGAGCGTGTTGGAACCTGCAGTCGAAAACAAACACGACGCGGAGCGCACGttcgtttttataaaattctggCAGAGTAAacataacaTCATGGAAAACAGATCACCAGCTTCTACCACAAGGAAAAAAAGAGCTCAATGGTCTTCGCAACAGATGGAAAACGCTGTTAAAATGGTAGAAAGGGGTATATTATCTACATATGCTGCTGCAGCTAGATACAACATCCCAAGAAGAACCCTACGCAACCATCTAGTGAGTGGTTCGACTACACGAAAGCTGGGTCGGTCGACTATATTGACTACAGAACAAGAAGCTGGACTTGTCAGAAGAATCATACGTTTGGCCGATGTTGGAGTGCCGATGACTTCAAAGATGTTGCGCGTACAGGCTTTTTCTTTCTGTAAAATTAGGAAAATTCCAAACACTTTTAATGATGCCAAAAATGTCGCGGGGAAGAAATGGTTGAGGTTATTTCTCAAACGACACCCTGAATTAGCACGTCGTAAAGCACAAATGATGAATCCAGCTCGTgctcaaaaattaaataaatatattgttgGAGATCACTTTTCTAAATACAAAAGCGTGCTGGATAGACTTGGGATTGAACATAAACCTGAAAGCATTTACAACATCGATGAAAAAAATTGTCGCATATCATTGCACCATCAGCAGGAAGTTCTGACAGCCAAAGGGAGAAAGAGAGTTCATCAAATAGCGAATGAGCATGCTGAAAGTGTGACTGTGGTAGGCTGCGGAAATGCTATAGGATCAGCTATTCCGCCAATGATACTGTTCAAAGGCAAAAGACTAAAGCCAGAATTCCAAGATAATTTACCTCCAGGCTCTCTGGTGAAGATGACGCCAAAAGGAAATATGACGACAGAAACTTTCATAGAGTTTATTAATCATTTGCATAAATATAGAACATCAAGACCATGTCTCCTCATATTTGATGGTGCAAAATGCCACCTGAACTTTACTATTGTCGAGGAAGCTGAGAAATGTGGCATTACGTTATATTGTCTTCCGTCAAATACCACGCATGAATTACAGCCCATGGATAAATCTGTTTATCGTTCTTTTGAGCATCATTGGGACCAAGAGTTGATTAAATACGTCAGTCAGCATCCCGAACGAACCCTTAACAAGACAAGCTTCAATGTCATTCTCTCACAAGTATGGCCAAAATGTATGACTATTACCAATATCTCGAATGGGTTTCGCGCCACAGGGTTGTATCCATATAACCCAGATGCTATTCCAGAAGAGGCGTTTGCGCCCTCTGCGTTGTCAGAACTTCCAAATCCTACAAACAGTGAAAATATTGCTGTCTTATCTGATGAATCGGGAGAACAAGAGATTTCAACTGCAAATGTGGAAGATTCAGATGGCTCAGGCACAGATACTGAGAATTTGCCACTATCCTTGCTCTTAAAAAACAATCCTGATGCTGTAACTCCACAAAAGATAGACAATCAATCAACCACATGTGAGATTCATGAGTTTTTACCAACTCCTAAGTTTAAAGTTAAAGTGACTGCTCCACGCAAGAAGTCTTTGAATTACAGGGCTCAAGAGGTAACCAAAGATTTGTTTGGTGACAATGCTACGAATTCCATATCACAGATTACTGTACCATCGTCAAGAGTAGAAGATGTTCCTGGCACTTCTtccatgataaaaaataacacaaaggcACCAAAATCAGCGTCAGTTACTGGCTGTACATCTGCACAACCTGCAACTTCGGTTAATACTGCTTCTTTGACAGCAGATAAGCTTACGGGATCTAAACCAAAACGTCACGATAATAAACCTTCTTGGTACTGCCCAGCTTGTAAAGAAGATCGAGTTGATGATATGCGACAATGTCTTACTTGTGGCGTTTGGTATCATGAGCTGTGCGTTGGACTCACACGcgctgataaaatattttactgttcAGGAGATTGTTGTAAAAAAAAGATGAAAAAGGCTGATTAA
- Protein Sequence
- MTLRSGIITSAGRAATASVLEPAVENKHDAERTFVFIKFWQSKHNIMENRSPASTTRKKRAQWSSQQMENAVKMVERGILSTYAAAARYNIPRRTLRNHLVSGSTTRKLGRSTILTTEQEAGLVRRIIRLADVGVPMTSKMLRVQAFSFCKIRKIPNTFNDAKNVAGKKWLRLFLKRHPELARRKAQMMNPARAQKLNKYIVGDHFSKYKSVLDRLGIEHKPESIYNIDEKNCRISLHHQQEVLTAKGRKRVHQIANEHAESVTVVGCGNAIGSAIPPMILFKGKRLKPEFQDNLPPGSLVKMTPKGNMTTETFIEFINHLHKYRTSRPCLLIFDGAKCHLNFTIVEEAEKCGITLYCLPSNTTHELQPMDKSVYRSFEHHWDQELIKYVSQHPERTLNKTSFNVILSQVWPKCMTITNISNGFRATGLYPYNPDAIPEEAFAPSALSELPNPTNSENIAVLSDESGEQEISTANVEDSDGSGTDTENLPLSLLLKNNPDAVTPQKIDNQSTTCEIHEFLPTPKFKVKVTAPRKKSLNYRAQEVTKDLFGDNATNSISQITVPSSRVEDVPGTSSMIKNNTKAPKSASVTGCTSAQPATSVNTASLTADKLTGSKPKRHDNKPSWYCPACKEDRVDDMRQCLTCGVWYHELCVGLTRADKIFYCSGDCCKKKMKKAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220597;
- 90% Identity
- iTF_00032856;
- 80% Identity
- -