Hlin024113.1
Basic Information
- Insect
- Hyles lineata
- Gene Symbol
- -
- Assembly
- GCA_030180105.1
- Location
- JARJEE010000042.1:1277646-1281794[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-07 0.00011 22.4 0.2 4 37 65 98 62 106 0.88
Sequence Information
- Coding Sequence
- atGACCAAAATTCGGCGAAATTTACTACAAGGGGCCCGTGCCGCGAACGTGTCGGAACCTGCAGTCGCAAACAACAACGACGCGGAGCGCAcgcttgtttttataaaattctggCAGTGTAAacaTAACATCATGGAAAACGAATCACCAGCTTCTACCACAAAGAAAAAAAGGGCTCAATGGACTTCGCAACAGATAGAAAACGCTGTTAAAATGGTAGAAAGGGGTATATTATCTACATATGCTGCTGCAGCCAGATATAACATCCCAAGAAGAACCCTACGCAACCATCTAGCGAGTGGGTCGACTACACGAAAGCTGGGTCGGTCGGCTATATTGACTACAGAACAAGAAGCTGCACTAGTCAGAAGAATCATACGTTTGGCTGATGTTGGAGTGCCGTTGACATCAAAGATGTTGCGCATACAGGCTTTTTCattctgtaaaattaataaaattccaaACACTTTCAATGAAGCCAAAAACGCCGCGGGGAAGAAATGGTTGAGGTTGTTTCTCAAACGACACCCTGAATTAGCACGTCGTAAAGCACAGATGATGAATCCAGCTCGTgctcaaaaattaaataaaggtatTGTTAGCGATCATTTTTCCAAATACAAAAGTGTGCTGGATAGACTTGGAATTGAACATAAACCTGAAAGCATTTACAACATCGatgaaaaaaattgtcgcatatCTTTGCACCATCAACGGGAAGTTCTGACAGCCAAAGGAAGAAAAAGAGTTCATCAAATAGCGAATGAGCATGCTGAAAGTGTAACTGTGGTAGGCTGCGGAAATGCCATAGGATCAGCTATTCCACCAATGATATTGTTCAAAGGCAAGAGACTAAAGCCAGAATTCCAAGACAATTTACCTCCAGGCTCTCTGGTGAAGATGACGCCAAAAGGAAGTATGACGACAGATACTTTCATagagtttattaatcatttgcaTAAATACCGAACATCAGGGCCATGTCTCCTCATATTTGATGGTGCAAAATGCCACGTGGACTTCACTATTGTCGAGGAAGCTGAAAAATGTGGCATTACTTTATATTGTCTTCCGTCAAATACCACGCATGAGTTACAGCCCATGGATAAATCTGTTTATCGTTCTTTTGAGCACCATTGGGACCAAGAGTTGATTAAATACGTCAGTCAGCATCCCGAACGAGCCCTTAACAAGACAAGCTTCAATGTCATTCTCTCACAAGTATGGCCGAAATGTATGACTATTACTAATATCTCGAATGGGTTTCGCGCTACAGGGTTATATCCATATAACCCAGATGCTATACCTGAAGAGGCGTTTGCGCCCTCTGCGTTGTCAGAACTTCCAAATCCTACAAACAGTGAGAATATTGCTGTCTTATCTAATGATGATGAATCAAGAGAACAAGAGATTTCAACTGCAAATGTGGAAGATTCAGATGGGTCAGGCACAGATACAGAGAATTTGCCACTGTCCTTGCTCTCAAAAGACAATCCGTATGCTGGAACTCCACTGAAGATAGACAGCCAATCAACCGTGTGTGAGATTCATAAATTTTTACCAACTCCTAAGTTTAAAGTTGTAGCGACTGCTCCACGCAAGAAGTCTCTGAATTATAGGGCTCAAGAGGTAACAAAAGATTTGTTTGGTGACAGTGCTATGAATTCCACATCACAGATTTCTGTACCATCGTCAAGAGTAGAAGATGTTCCTGGTACTTCGTCCATGATACAGATTAATACAAAGACACCAAAATCAACCTCTGTTACTGGCTGCACATCTGCACAACCTGCAGTTGCTGCAACGCGAAAGCGAACGTCAGTAAAGACTGCTTCTTTGATATCAGATAAGCTTACGGAATCTAAACCAAAACGTCACGATAATAAACACGATTCTTGGTACTGTCCAGCTTGTAAAGAAGATCGAGTTGATGATATGCGACAGTGTCTTACTTGTGCGGTTTGGTATCATGAGTTGTGTGTTGGACTCACAcctgatgataaaatattttactgttcaggagattgtttaaaaaaaaagataaaaaaggctaattaa
- Protein Sequence
- MTKIRRNLLQGARAANVSEPAVANNNDAERTLVFIKFWQCKHNIMENESPASTTKKKRAQWTSQQIENAVKMVERGILSTYAAAARYNIPRRTLRNHLASGSTTRKLGRSAILTTEQEAALVRRIIRLADVGVPLTSKMLRIQAFSFCKINKIPNTFNEAKNAAGKKWLRLFLKRHPELARRKAQMMNPARAQKLNKGIVSDHFSKYKSVLDRLGIEHKPESIYNIDEKNCRISLHHQREVLTAKGRKRVHQIANEHAESVTVVGCGNAIGSAIPPMILFKGKRLKPEFQDNLPPGSLVKMTPKGSMTTDTFIEFINHLHKYRTSGPCLLIFDGAKCHVDFTIVEEAEKCGITLYCLPSNTTHELQPMDKSVYRSFEHHWDQELIKYVSQHPERALNKTSFNVILSQVWPKCMTITNISNGFRATGLYPYNPDAIPEEAFAPSALSELPNPTNSENIAVLSNDDESREQEISTANVEDSDGSGTDTENLPLSLLSKDNPYAGTPLKIDSQSTVCEIHKFLPTPKFKVVATAPRKKSLNYRAQEVTKDLFGDSAMNSTSQISVPSSRVEDVPGTSSMIQINTKTPKSTSVTGCTSAQPAVAATRKRTSVKTASLISDKLTESKPKRHDNKHDSWYCPACKEDRVDDMRQCLTCAVWYHELCVGLTPDDKIFYCSGDCLKKKIKKAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220597;
- 90% Identity
- iTF_01429874;
- 80% Identity
- -