Hchr025376.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- -
- Assembly
- GCA_947063395.1
- Location
- OX346736.1:553325-555606[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-08 7e-06 26.3 0.2 4 40 49 85 46 90 0.87
Sequence Information
- Coding Sequence
- ATGTTAGAACCTGCAGTCGAAAACAATCACGACGCGAAGCGCAcgcttgtttttataaaattctggCAGAATAAAcaTAACATCATGGAAAGCGGATCACCAGCTTCTACCACAAGGAAAAGAAGGGCTCAATGGACTTCGCAACAGATGGAAAACGCTGTAAAAATGGTAGAAAGGGGAATATTATCTACATATGCTGCTGCAGCCAGATATAATATCCCAAGAAGAACCCTACGCAACCATCTAAAGAGTGGTTCGACTACACGAAAGCTAGGTCGGTCGGCTATATTGACTGCAGAACATGAAGCTGGACTTGTCAGAAGAATCATACGTTTGGCTGATGTTGGAGTGCCGATGACTTCAAAAATGTTGCGCATACAGGCTTTTTCATTctgtaaaattaagaaaattcctaacacTTTTAATGATGCTAAAAATGCTGCGGGGAAGAAATGGTTGAGGTTATTTCTCAAACGACACCCTGAGTTAGCACGTCGTAAAGCACAGATGATGAATCCAGCTCGTgctcaaaaattaaataaagatattgTTGGCGATCACTTTTCCAAATACAAAAGCGTGCTAGATAGACTGGGAATTGAACATAAACCTGAAAGCATTTACAACATCGATGAAAAAAATTGCCGCATATCTTTGCACCATCAGCAGGAAGTTCTGACAGCCAGAGGGAGAAAGAGGGTTCATCAAATAGCGAATGAGCATGCTGAAAGTGTGACTGTGGTAGGCTGCGGAAACGCTATAGGATCAGCTATTCCGCCAATGATACTGTTTAAAGGCAAGAGATTAAAGCCGGAATTCCAAGATAATTTACCTCCAGGCTCTCTGGTGAAGATGACGCCAAAAGGAAGTATGACGACAGAGACTTTCATAGAGtttataaatcatttgaataaatacaGAACATCAGGGCCATGTCTCCTCATATTTGATGGTGCAAAATGCCACCTGGACTTTACTATTGTCGAGGAAGCTGAGAAATGTGGCATTACTTTATATTGTCTTCCGTCAAATACGACGCATGAATTACAACCCATGGATAAATCTGTTTATCGTTCTTTTGAGCATCATTGGGACCAAGAGTTGATTAAATACGTCAGTCAGCATCCCGAACGATCCCTTAACAAGACTAGCTTCAATGTAATTCTGTCACAGGTATGGCCGAAATGTATGACAATTTCTAATATCACGAATGGGTTTCGCGCTACAGGGTTGTATCCATATAACCCAGATGCTATTTCTGAAGAGGCGTTTGCGCCCTCTGCGTTGTCAGAACTCCCAGTTCCTTCAAACAGGGAGAATATTGCTGTCTTCTCTGATGCATTGAGGGAACAGGCGACTTCAACTGGAAATGTGGAAGATTCAGATGGGTCAGGCACAGACACTGAGAATTTGCCACTGTCCTTGCTCTCAAAAAACAAATCTCCGAATTCTGGAACTCCAAATAAGATAAACAAACAGTCAACCACGTGTGAGGTTCATGATTTTTTACCCACACCTAAATTTAAAGTTAAACCGACTTTGCCACGTAAGAAGTCTTTAAATTACAGGGCTCAAGAAGTAACAAAAGATTTGTTTGGTGACAATGCTACGAATTCCACATCACAAATTACTGTACCATCGTCAAGAAAAGAAGATGTTCCTGGTACTTCTTCCATGATGAAGATAAACACAAAGTCACCAAAAGTAGCAGTTACTGGCTGTACATCTGCACAACCTGCAGTGACTGCTACGCGACACCGAACCTCAGTAAAGACTGTTTCTTTGATCGCAGATAAGCTTACGGGATCTAAACCAAAACGTCGCGATAACAAATCTTCTTCATCATCTTGGTACTGTCCAGCTTGTAATGAAGATAGAGTTGATGATATGCGACAATGTCTTACTTGTGACGTTTGGTATCATGAGCTGTGTGTTGGACTCACACCCGCTGAGAAAATATTTTACTGTTCAGgagattgtttaaaaaaaaagatgaaaaaggCTGATTAA
- Protein Sequence
- MLEPAVENNHDAKRTLVFIKFWQNKHNIMESGSPASTTRKRRAQWTSQQMENAVKMVERGILSTYAAAARYNIPRRTLRNHLKSGSTTRKLGRSAILTAEHEAGLVRRIIRLADVGVPMTSKMLRIQAFSFCKIKKIPNTFNDAKNAAGKKWLRLFLKRHPELARRKAQMMNPARAQKLNKDIVGDHFSKYKSVLDRLGIEHKPESIYNIDEKNCRISLHHQQEVLTARGRKRVHQIANEHAESVTVVGCGNAIGSAIPPMILFKGKRLKPEFQDNLPPGSLVKMTPKGSMTTETFIEFINHLNKYRTSGPCLLIFDGAKCHLDFTIVEEAEKCGITLYCLPSNTTHELQPMDKSVYRSFEHHWDQELIKYVSQHPERSLNKTSFNVILSQVWPKCMTISNITNGFRATGLYPYNPDAISEEAFAPSALSELPVPSNRENIAVFSDALREQATSTGNVEDSDGSGTDTENLPLSLLSKNKSPNSGTPNKINKQSTTCEVHDFLPTPKFKVKPTLPRKKSLNYRAQEVTKDLFGDNATNSTSQITVPSSRKEDVPGTSSMMKINTKSPKVAVTGCTSAQPAVTATRHRTSVKTVSLIADKLTGSKPKRRDNKSSSSSWYCPACNEDRVDDMRQCLTCDVWYHELCVGLTPAEKIFYCSGDCLKKKMKKAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220597;
- 90% Identity
- iTF_00709168;
- 80% Identity
- iTF_00790199;