Alyc027366.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796864.1:5194988-5197885[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-08 1.2e-05 26.3 0.2 4 40 81 117 78 122 0.87
Sequence Information
- Coding Sequence
- ATGGTGGCTGCGGGGACGCCAGGAGTCACCGCCCCTTCGCCCGGAGGAGTACTGGTTGGAGGCCTGAAAGTAAAGCAAGCGGCCCGTGCCGCGAGCGTGTTGGAACCTGCAGTCGAAAACAACCACGACGCGGAGCGCAcgcttgtttttataaaatttgtgCAGAGTAAACaAAACATCATGGAAAACGGATCACCAGCTTCTACCACAAGGCAAAAAAGGGCTCAATGGACTTCGCAACAGATGGAAAACGCTGTTAAAATGGTAGAAAGGGGTATATTATCTACATATGCAGCTGCAGCCAGATACAACATACCAAGAAGAACCCTACGCAACCATCTAAAGAGTGGTTCGACTACACGAAAGCTAGGTCGGTCGGCTATATTGAATATAGAACAAGAAGCTGGACTTGTCAGAAGAATCATACGTTTGGCTGATGTTGGAGTGCCGATGACTTCAAAGATGTTGCGCGTACAAGCTTTTTCATTctgtaaaattaagaaaattccAAACACTTTCAATGATGCCAAAAATGCCGCGGGGAAGAAATGGTTGAGGTTATTTCTCAAACGACACCCTGAATTAGTACGTCGTAAAGCACAGATGATGAATCCAGCTCGTGCTCAAAAACTAAATAAAGATATTGTTAGCGATCATTTTTCCAAATACAAAAGCGTGCTGGATAGACTTGGAATTGAACATAAACCTGAAAGCATTTACAACATCGATGAAAAAAATTGTCGCATATCTTTGCACCATCAGCAGGAAGTTCTGACAGCCAAAGGGAGAAAAAGAGTTCATCAAATAGCAAATGAGCATGCTGAAAGTGTGACTGTGGTAGGCTGCGGAAATGCTATAGGATCAGCTATTCCGCCAATGATACTGTTCAAAGGCAAGAGACTAAAGCCAGAATTCCAAGATAATTTACCTCCAGGCTCTCTGGTGAAGATGACGCCAAAAGGAAGTATGACGACAGAAACTTTCATAGAGTTTATTAATCATTTGCATAAATATAGAACATCAGGGCCATGTCTCCTCATATTTGATGGTGCAAAATGCCACCTGGACTTTACTATTGTTGAGGAAGCTGAGAAATGTGGCATGACTTTATATTGTCTTCCGTCAAATACGACGCATGAATTACAGCCCATGGATAAATCTGTGTATCGTTCTTTTGAGCACCATTGGGACCAAGAGTTGATTAAATACGTCAGTCAGCATCCCGAACGAACCCTTAACAAGACAAGCTTCAATGTCATTCTCTCACAAGTATGGCCGAAATGTATGACCATAACCAATATCTCGAATGGGTTTCGCGCTACAGGGTTGTATCCATATAACCCAGATGCTATTCCTGAAGAGGCATTTGCGCCCTCTGCGTTGTCAGAACTTCCAAATCCTACAAACAGTGAGAATATTGCTGTCTTATCTGATGAATCGGGGGAACAAgagatttcaactgcaaatgtggAAGATTCAGATGGGTCAAGCACAGATACTGAGAATTTGCCATTGTCCTTGCTCTCAAAAAACAATTCGGATGCTGGAACTCCACATAAGATAGACAATCAATCAACCACATGTGAGATTCATGAATTTTTACCAACTCCTAAGTTTAAAGTTAAAGCGACTGCTCCACGTAAGAAGTCTCTGAATTACAGGGCTCAAGAGGTAACAAAAGATTTGTTTGGTGACAATGCTACGAATTCCACATCACAGATTACTATACCATCGTCAAGAGTAGAAGATCTTCCTGGTACGTCTTCCATGATAAAGATTAACACAAAGACACCAAAATCAGCGTCGGTTACTGGCTGTACATCTGTACAACCTGCAGTTGCTGCAACGCGAAAGCAAACCTCAGTAAAGACTGCTTCTTTGACAGCAGATAAGCTTATGGGATCTAAACCAAAACGTCACGATAATGAACCTTCTTGGTACTGTCCAGCTTGTAAAGAAGATCGAGTTGATGATATGCGACGATGTCTTACTTGTGGCATTTGGTATCATGAACTGTGTGTTGGACTCACACCCgctgataaaatattttactgttcaggagattgttttaaaaaaaaaggctga
- Protein Sequence
- MVAAGTPGVTAPSPGGVLVGGLKVKQAARAASVLEPAVENNHDAERTLVFIKFVQSKQNIMENGSPASTTRQKRAQWTSQQMENAVKMVERGILSTYAAAARYNIPRRTLRNHLKSGSTTRKLGRSAILNIEQEAGLVRRIIRLADVGVPMTSKMLRVQAFSFCKIKKIPNTFNDAKNAAGKKWLRLFLKRHPELVRRKAQMMNPARAQKLNKDIVSDHFSKYKSVLDRLGIEHKPESIYNIDEKNCRISLHHQQEVLTAKGRKRVHQIANEHAESVTVVGCGNAIGSAIPPMILFKGKRLKPEFQDNLPPGSLVKMTPKGSMTTETFIEFINHLHKYRTSGPCLLIFDGAKCHLDFTIVEEAEKCGMTLYCLPSNTTHELQPMDKSVYRSFEHHWDQELIKYVSQHPERTLNKTSFNVILSQVWPKCMTITNISNGFRATGLYPYNPDAIPEEAFAPSALSELPNPTNSENIAVLSDESGEQEISTANVEDSDGSSTDTENLPLSLLSKNNSDAGTPHKIDNQSTTCEIHEFLPTPKFKVKATAPRKKSLNYRAQEVTKDLFGDNATNSTSQITIPSSRVEDLPGTSSMIKINTKTPKSASVTGCTSVQPAVAATRKQTSVKTASLTADKLMGSKPKRHDNEPSWYCPACKEDRVDDMRRCLTCGIWYHELCVGLTPADKIFYCSGDCFKKKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220597;
- 90% Identity
- iTF_00032856;
- 80% Identity
- -