Pint008001.1
Basic Information
- Insect
- Plodia interpunctella
- Gene Symbol
- -
- Assembly
- GCA_027563975.2
- Location
- CM050473.1:5412106-5414730[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.6e-09 5.3e-06 26.3 0.2 4 40 60 96 57 101 0.87
Sequence Information
- Coding Sequence
- ATGATCAGATGTCAAGGGGCCGGTGCCGCGAGCGTGTTGGAACCTGCAGTCGAAAACAACCACGACGCGGAGCGCAcgcttgtttttataaaattctggAAGAGTAAACATAACATCATGGAAAACGAATCACCAGCTACTAccacaaagaaaaaaagggCTCAGTGGACTTCGCAACAGATGGAAAACGCTGTAAAAATGGTAGAAAGGGGTATATTATCTACATATGCTGCTGCAGCTAGATACAACATCCCAAGAAGAACCCTACGCAACCATCTAAAGAGTGGTTCGACTACACGAAAACTAGGTCGGTCGACTATATTGACTACAGAACAAGAAGCTGGACTTGTCAGAAGAATAATTCGTTTGGCTGATGTTGGAGTACCGATGACTTCAAAAATGTTGCGCGTACAGGCTTTCTCATTctgtaaaattaagaaaattccAAACACTTTCAATGATGCCAAAAATGCAGCGGGGAAAAAATGGTTGAGATTATTCCTCAAACGACACCCTGAATTAGCACGTCGTAAAGCACAGATGATGAATCCAGCTCGTGctcaaaaactaaataaagatattgttAGAGATCACTTTTCCAAATACAAAAGCGTGCTGGATAAACTTGGAATGGAACATAAACCTGAAAGCATTTACAACATTGATGAGAAAAATTGTCGCATATCTTTGCACCATCAGCAGGAAGTTCTGACAGCCAAAGGGAGAAAGAGAGTTCATCAAATAGCGAATGAGCATGCTGAAAGTGTGACTGTGGTAGGCTGCGGAAATGCTATAGGATCGGCTATTCCGCCAATGATACTATTTAAAGGCAAGCGACTAAAGCCAGAATACCAAGATAATTTACCACCAGGATCTCTGGTGAAGATGACGCCAAAAGGAAGTATGACAACAGAAACATTCATAGAGTTTATTaatcatttgaataaatacagAACATCAGGGCCATGTCTCCTTATATTTGATGGTGCAAAATGCCACTTGGACTTTACTATTGTCGAGGAAGCTGAGAAATGTGGCATCACTTTATATTGTCTTCCGTCAAATACCACTCACGAATTACAGCCCATGGATAAATCCGTTTATCGTTCTTTTGAGCACCATTGGGACCAAGAGTTGATTAAATACGTCAGTCAGCATCCCGAACGAACCGTTAACAAGACAAGCTTCAATGTTATTCTCTCACAAGTATGGCCGAAATGTATGACTATTACCAATATCTCGAATGGGTTTCGCGCTACAGGGTTGTATCCATATAACCCAGATGCTGTACCTGAAGAGGCGTTTGCGCCCTCTGCGTTGTCAGAACTTCCAATACCTACAAACAGTGAGAATATGGCTGTCTTATCCGATGAAGCAAGACAAACGGGAGAACAAGAGATTTCAACTGCAAATGTGGAAGATTCAGATGGCTCAGGCACAGATACTGAAAATTTGCCACTGTCCTTgctctttaaaaataacctgAATGCTGAAACTCCACATAAGATAGACAATCAATCCACCACGTGTGAAATTCATGAATTTTTACCAACTCCTAAGTTTAAAGTTAAAGCGACTGCTCCACGCAAGAAGTCTCTGAATTACAGGGCTCAAGAGGTAACAAAAGATTTGTTTGGTGACAAAGCTACGAATTCCACACCACAGACTACTGTACCATCGTCAAGAGCAGAAGCTGTTCCGGGCACTTCTTCAATGATAATGATTGACACAAAGACACCAAAATCAACGTCAGTCACTGGCCGTACATCTGCACAAACTGCAGTCGCTGCAACGAGGACCGCTTCTTTGACAGCAGATAAGCTTACGGGATCAAAACCAAAACGTCACGATAAGAAATCTTCTTGGTACTGTCCAGCTTGTAAAGAAGATCGAGTTGATGATATGCGACAATGTCTTACTTGTGGCGTTTGGTATCATGAGCTGTGTGTTGGACTCACATcaactgataaaatattttactgttctggagattgtttaaaaaaaaagttgaaaaaggctgattaa
- Protein Sequence
- MIRCQGAGAASVLEPAVENNHDAERTLVFIKFWKSKHNIMENESPATTTKKKRAQWTSQQMENAVKMVERGILSTYAAAARYNIPRRTLRNHLKSGSTTRKLGRSTILTTEQEAGLVRRIIRLADVGVPMTSKMLRVQAFSFCKIKKIPNTFNDAKNAAGKKWLRLFLKRHPELARRKAQMMNPARAQKLNKDIVRDHFSKYKSVLDKLGMEHKPESIYNIDEKNCRISLHHQQEVLTAKGRKRVHQIANEHAESVTVVGCGNAIGSAIPPMILFKGKRLKPEYQDNLPPGSLVKMTPKGSMTTETFIEFINHLNKYRTSGPCLLIFDGAKCHLDFTIVEEAEKCGITLYCLPSNTTHELQPMDKSVYRSFEHHWDQELIKYVSQHPERTVNKTSFNVILSQVWPKCMTITNISNGFRATGLYPYNPDAVPEEAFAPSALSELPIPTNSENMAVLSDEARQTGEQEISTANVEDSDGSGTDTENLPLSLLFKNNLNAETPHKIDNQSTTCEIHEFLPTPKFKVKATAPRKKSLNYRAQEVTKDLFGDKATNSTPQTTVPSSRAEAVPGTSSMIMIDTKTPKSTSVTGRTSAQTAVAATRTASLTADKLTGSKPKRHDKKSSWYCPACKEDRVDDMRQCLTCGVWYHELCVGLTSTDKIFYCSGDCLKKKLKKAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220597;
- 90% Identity
- iTF_00032856;
- 80% Identity
- -