Bneb043964.1
Basic Information
- Insect
- Brachynemurus nebulosus
- Gene Symbol
- -
- Assembly
- GCA_035578155.1
- Location
- JAPWDM010000073.1:425945-427852[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.8e-09 1.4e-06 29.3 0.3 4 40 21 58 18 63 0.85
Sequence Information
- Coding Sequence
- ATGGAAAACGAATCACCAGCTACTACCACAAAGAAAAAAAGGGTTCAATGGACTTCGCAGCAGATGGAAAACGCTGTTAAAATGGTAGAAAGAGGTAAACTATCTACATATGCTGCTGCAGCCAGATACAACATCCCAAGAAGAACCCTACGCAACCATGTAGCGAGTGGGTCGACTACACGAAAGCTAGGTCGGTCGGCTATATTGACTACAGAACAAGGAGCTGGACTTGTCAGAAGAATCATACGTTTGGCTGATGTTGGAGTGCCGTTGACATCAAAGATGTTGCGCGTACAGGCTTTTTCATTCtgtaaaattaagaaaattccaAACACTTTCAATGATGCCAAAAACGTCGCGGGGAAGAAATGGTTGAGGTTATTTCTCAAACGACACCCTGAATTAGCACGTCGTAAAGCACAGATGATGAATCCAGCTCGtgctcaaaaattaaataaagatattGTTAGCGATCACTTTTCCAAATACAAAAGTGTACTGGATAAACTTGAAATTGAACATAAACCTGAAAGCATTTACAACATCGATGAAAAAAATTGTCGCATATCTTTGCACAATCAACAGGAAGTTCTGACAGCCAAAGGGAGAAAAAGAGTTCATCAAATAGCGAATGAGCATGCTGAAAGTGTGACTATGGTAGGCTGCGGAAATGCTATAGGATCAGTTATTCCGCCAATGATATTGTTCAAAGGCGAGAGACGAAAGCCAGAATTCCAAGACAATTTACCTACAGGCTCTCTGGTGAAGATGACGCCAAAAGGAAGTATGACGACAGAAACTTTCATAGAGTTTATTAATCATTTGCATAAATACAGAACATCAGGGCCATGTCTCCTCATATTTGATGGTGCAAAATGCCACCTGGACTTTACTATTGTCGAGGAAGCTGAGAAATGTGGCATTACTTTATATTGTCTTCCGTCAAATACCACGCACGAGTTACAGCCCATGGATAAATCTGTTTATCGTTCTTTTGAGCACCATTGGGACCAAGAGTTGATTAAATACGTCAGTCAGCATCCCGAACGAACCCTTAACAAGACAAGCTTCAATGTCATTCTCTCACAAGTATGGCCGAAATGTATGACTATTACCAATATCTCGAATGGGTTTCGCGCTACAGGGTTATATCCATATAACCCAGATGCTATTCCTGAAGTGGCGTTTGCGCCCTCTGCGTTGTCAGAACTGCCAAATCCTACAAACAGTGAGAATATTGCTGTCTTATCTGATGAATTGGGGGAACAAGAGATTTCAACTGCAAATGTGGAAGATTTAGATGGGTTAGGCACAGATACTGAGAATTTGCCACTGTCCTTGCTCTCAAAAAACAACCCAAATGCTGGAACTCCACAAAAGATAGACAACCAATCAACCACGTGTGAGATTCATGAATTTTTACCAACTCCTAAGTTTAAAGTTGTAGCGACTGCTCCACGCAAGAAGTCTCTGAATTACAGAGCTCAAGAGGTAACAAAAGATTTATTTGGTGACAGTGCTACGAATTCCACATCACAGATTATTGTACCATCATCAATAGTAGATGTTCCTGGTACTTCATCTATGATAAAGATTAACACAAAGACACCAAAATCAGCGTCAGTTACTAGCTGTACATCTGCACAACCTGAAGTTGCTGCAACGCGAAAGCGAACCTCAGTAAAGACTGCTTCTTTGACAGCAGATAAGCCTACGGAATATAAAGAAAAACGTCACGATAATAAACCTTCTTGGTACTGTCCAGCTTGTAAAAAAGATCGAGTTGATGATATGCGACAATGTCTTACTTGTGGCGTTTGGTATCATGAGGTGTGTGTTGGACTCACACCtgctgataaaatattttactgttcAGGAGATTGtctaaaaaaagatgaaaaaggCTGA
- Protein Sequence
- MENESPATTTKKKRVQWTSQQMENAVKMVERGKLSTYAAAARYNIPRRTLRNHVASGSTTRKLGRSAILTTEQGAGLVRRIIRLADVGVPLTSKMLRVQAFSFCKIKKIPNTFNDAKNVAGKKWLRLFLKRHPELARRKAQMMNPARAQKLNKDIVSDHFSKYKSVLDKLEIEHKPESIYNIDEKNCRISLHNQQEVLTAKGRKRVHQIANEHAESVTMVGCGNAIGSVIPPMILFKGERRKPEFQDNLPTGSLVKMTPKGSMTTETFIEFINHLHKYRTSGPCLLIFDGAKCHLDFTIVEEAEKCGITLYCLPSNTTHELQPMDKSVYRSFEHHWDQELIKYVSQHPERTLNKTSFNVILSQVWPKCMTITNISNGFRATGLYPYNPDAIPEVAFAPSALSELPNPTNSENIAVLSDELGEQEISTANVEDLDGLGTDTENLPLSLLSKNNPNAGTPQKIDNQSTTCEIHEFLPTPKFKVVATAPRKKSLNYRAQEVTKDLFGDSATNSTSQIIVPSSIVDVPGTSSMIKINTKTPKSASVTSCTSAQPEVAATRKRTSVKTASLTADKPTEYKEKRHDNKPSWYCPACKKDRVDDMRQCLTCGVWYHEVCVGLTPADKIFYCSGDCLKKDEKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220597;
- 90% Identity
- iTF_00032856;
- 80% Identity
- -