Hamb005345.1
Basic Information
- Insect
- Hoplodrina ambigua
- Gene Symbol
- -
- Assembly
- GCA_949774945.1
- Location
- OX458965.1:10195460-10201481[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-08 1.3e-05 25.4 0.1 4 37 53 86 50 94 0.89
Sequence Information
- Coding Sequence
- ATGCCACGCGAAGTTTCTGTAGCGAACGTCGGAAACAACAACGACGCGAAGCGCACgcgtgtttttataaaattctggcAGAGCAAacaTAACATCATGGAAAACGAATCACCAGCTTCTACCACAAGGAAAAGGAGGGCTCAATGGACTTCGCAACAGATGGAAAACGCTGTTAAAATGGTAGAAAGAGGTATATTATCTACATATGCTGCTGCAACCAGATACAACATCCCAAGAAGAACCCTACGCAACCATCTAGCGAGTGGGTCGACTACACGAAAGCTAGGTCGATCGGCTATATTGACTACAGAACAAGAAGCTGGACTTGTCAGAAGAATCATACGTTTGGCTGATGTTGGAGTACCGTTGACATCAAAGATGTTGCGCATACAGGctttttcattttgtaaaattaaaaaaattccaAACACTTTCAATGATGCCAAAAACGTCGCGGGGAAGAAATGGTTGAGGTTATTTCTCAAACGACACCCGGAATTAGCACGTCGTAAAGCACAGATGATGAATCCAGCTCGtgctcaaaaattaaataaagatattgttAGCGATCACTTTTCCAAATACAAAAGTGTGCTGGATAGACTTGAAATTGAACATAAACCTGAAAGCATTTACAACATCGATGAAAAAAATTGTCGCATATCTTTGCACCACCAGCAGGAAGTTCTGACAGCCAAAGGGAGAAAAAGAGTTCATCAAATAGCGAATGAGCATGCTGAAAGTGTGACAGTAGTAGGCTGCGGAAATGCTATAGGATCAGCTATTCCCCCAATGATATTGTTCAAAGGCAAGAGACTAAAGCCAGAATTCCAAGACAATTTACCTCCAGGCTCTCTGGTGAAGATGACGCCAAAAGGAAGTATGACGACAGAAACTTTCATTGAGTTTATTAAGCATTTGCATAAATACAGAACATCAGGGTCATGTCTTCTCATATTTGATGGTGCAAAATGCCACCTGGACTTTACTATTGTCGAGGAAGCTGAGAAATGTGGCATTACTTTATATTGTCTTCCGTCAAATACCACGCATGAGTTACAGCCCATGGATAAATCTGTTTATCGTTCTTTTGAGCACCATTGGGACCAAGAGTTGATTAAATACGTCAGTCAGCATCCCGAACGAACCCTTAACAAGACAAGCTTCAATGTCATTCTCTCACAAGTATGGCCGAAATGTATGACTATTACCAATATCTCAAATGGGTTTCGCGCTACAGGGTTATATCCATATAACCCAGATGCTATTCCAGAAGAGGCGTTTGCGCCCTCTGCGTTGTCAGAACTTCCAAATCCTACAAATAGTGAGAATATTGCTGTCTTATCTGATGAATCGGAGGAACAAGAGATTTCAACAGCAAATGTTAAAGATTCAGATGGGTCAGGCACAGATACTGAGAGTTTACCACTGTCCTTGCTCTCAAAAAACAATCCGAATGCTGGAACTCCACAAAAAATAGACAATCAATCAACCACGTGTGAGATTCATGATTTTTTACCAACTCCTAAGTTTAAAGTTGTAGCGACTGCTCCACGCAAGAAGTCTCTGAATTACAGGGCTCAAGAGGTAACAAAAGATTTGTTTGGTGACAGTGCTACGAATTCCACATCACAGATTACTGTTCCATCGTTAAGAGTAGATGTTCCTGGTACTTCAGCCATGATAAAGAATAACACAAAGACACCAAAATCAGCGTCAGTTACTGGCTGTACATCTGCACAACCTGCAGTTGGTGCAACGCGAAAGCAAACCTCAGAAAAGACGGATTCTAAACCAAAACGTCACGATAATAAACCTTCTTGGTACTGTCCAGCTTGTAACGAAGATCGAGTTGATGATATGCGACAATGTCTTACTTGTGGCGTTTGGTATCATGAGGTGTGTGTTGGACTCACACCcgctgataaaatattttactgttcaggagattgtttaaaaaaaaagatgaaaaagGCTGattaa
- Protein Sequence
- MPREVSVANVGNNNDAKRTRVFIKFWQSKHNIMENESPASTTRKRRAQWTSQQMENAVKMVERGILSTYAAATRYNIPRRTLRNHLASGSTTRKLGRSAILTTEQEAGLVRRIIRLADVGVPLTSKMLRIQAFSFCKIKKIPNTFNDAKNVAGKKWLRLFLKRHPELARRKAQMMNPARAQKLNKDIVSDHFSKYKSVLDRLEIEHKPESIYNIDEKNCRISLHHQQEVLTAKGRKRVHQIANEHAESVTVVGCGNAIGSAIPPMILFKGKRLKPEFQDNLPPGSLVKMTPKGSMTTETFIEFIKHLHKYRTSGSCLLIFDGAKCHLDFTIVEEAEKCGITLYCLPSNTTHELQPMDKSVYRSFEHHWDQELIKYVSQHPERTLNKTSFNVILSQVWPKCMTITNISNGFRATGLYPYNPDAIPEEAFAPSALSELPNPTNSENIAVLSDESEEQEISTANVKDSDGSGTDTESLPLSLLSKNNPNAGTPQKIDNQSTTCEIHDFLPTPKFKVVATAPRKKSLNYRAQEVTKDLFGDSATNSTSQITVPSLRVDVPGTSAMIKNNTKTPKSASVTGCTSAQPAVGATRKQTSEKTDSKPKRHDNKPSWYCPACNEDRVDDMRQCLTCGVWYHEVCVGLTPADKIFYCSGDCLKKKMKKAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220597;
- 90% Identity
- iTF_00032856;
- 80% Identity
- -