Pruf015494.1
Basic Information
- Insect
- Pimpla rufipes
- Gene Symbol
- bab1
- Assembly
- GCA_963932165.1
- Location
- OZ010639.1:8585850-8594738[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 1.4e-14 53.8 0.0 1 43 49 92 49 94 0.95 2 2 2.3 2.5e+03 -1.4 1.1 6 15 168 177 166 181 0.89
Sequence Information
- Coding Sequence
- ATGTACGAGGATTGTAAGACTTGGTACAATACAAAAAACAGCTATCAGTACCAGCTTCAGTCGCTCTGGCAAAAGTGCTGGAACACCAACTCGGGCCTGGTGCACAATCTGCGCTTCCGGGAACGCGGACCCCTCAAGTCGTGGCGACCCGAGACGATGGCCGAGGCGATCTTCAGCGTTCTCAAGGAAGGACTTTCCCTCAGTCAGGCCGCAAGAAAATACGACATCCCCTATCCGACGTTCGTGCTGTACGCAAACCGAGTTCACAACATGCTTGGGCCTAGCTCCGATGGCGGGGCCGATCTTCGACCGAAGGGTCGCGGTAGACCCCAGAGGATCCTGCTCGGCGTCTGGCCGGACGAGCACATCCGCGGCGTGATTCGCGCGGTGGTTTTTCGCGACGGTCACATCGTCAAGGACGAGTCGAATCCGATGTATCCGAGTCTGGCGAATTACGCGTGCAACGGCCCGGAGGGTGCGGTCAGTCCCGGTGCCGCTGCGGCCGCTGCGGTCGCCGCGGTTGCTCAAGGTCTCCGACACCAGATGTGCAGCatggtggcggcggcgcagTCCCATCAGCACGACATGATAGCGACGAATCTCTCGGCGAATTTCCAGGCGGCGGTCCAGGTCAGCCAGCACCATCTGAACAACAACAGCCCGgcgagcaacaacaacaacaataataacaacaacaacaacagcaacaacaggaACTCGCCGTTGATCCTCGGTCTGCCGAGTCCGGGGTCGGGTGGGCCGCCGGAGAGCCCGATGGAGGGCAGCCCGCTCGCGAGTCCCCTGGCGCCGCTGATGGACCCGGCCCACATACCGAGCAGCGTCGAGGTCGGCATCGGCGTCAGCGGAATGACGTACAAGCCCGCCCGCAGCTTCGTCAGCCCCCGGCCGGAGAATCTCTTCCAGGAGGACATCGCCGACCTCGTCAAGAGTCCCCATTGCCACAAGGACAAGGACAAGGTGCCGGTGAAGCTCGAGCCGCTCTCCGACTCCCGGAGCGAGCAGTAA
- Protein Sequence
- MYEDCKTWYNTKNSYQYQLQSLWQKCWNTNSGLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSSDGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHIVKDESNPMYPSLANYACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAQSHQHDMIATNLSANFQAAVQVSQHHLNNNSPASNNNNNNNNNNNSNNRNSPLILGLPSPGSGGPPESPMEGSPLASPLAPLMDPAHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSPHCHKDKDKVPVKLEPLSDSRSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00378657; iTF_01273700; iTF_01103461; iTF_01102697; iTF_01508780; iTF_01101966; iTF_01101238; iTF_00397193; iTF_00840971; iTF_01000461; iTF_00996950; iTF_01001174; iTF_01560358; iTF_00451850; iTF_00996254; iTF_00438671; iTF_00459663; iTF_00937936; iTF_01005968; iTF_01055888; iTF_01056712; iTF_00057844; iTF_00058604; iTF_01273013; iTF_00629016; iTF_00050722; iTF_00046051; iTF_00046876; iTF_00253480; iTF_00350920; iTF_01129256; iTF_00047884; iTF_01473836; iTF_00262573; iTF_01379126; iTF_00798492; iTF_00905338; iTF_00377915; iTF_00652603; iTF_00343093; iTF_01004156; iTF_01004994; iTF_00397981;
- 90% Identity
- iTF_00905338;
- 80% Identity
- -