Nmel014475.1
Basic Information
- Insect
- Netelia melanura
- Gene Symbol
- bab1
- Assembly
- GCA_964007305.1
- Location
- OZ023256.1:38338157-38346295[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-17 2e-14 53.6 0.0 1 43 86 129 86 131 0.95 2 2 5.6 4.3e+03 -1.9 1.4 6 15 206 215 204 218 0.88
Sequence Information
- Coding Sequence
- atgcAAGCATCGAGTGCGAGAGGAGATCTCTTGAGGGAAATAAACGAAGCTCTCGCGGGAACTGCCTTACGGTTCAAACCCGAAGGACCGGCCAAGTTGCTGGAATCTTCCCACGCTTGGCTCGGCGCTTCCACCTCCAATATATCAGACAGCTATCAGTATCAACTTCAGTCGCTGTGGCAAAAATGCTGGAATACGAATTCGGGCCTGGTACACAATCTGCGATTTCGCGAAAGGGGACCTCTGAAATCGTGGCGGCCCGAGACAATGGCTGAAGCGATTTTTAGCGTTCTCAAGGAAGGACTTTCGCTGAGTCAGGCTGCCAGaaaatacgACATCCCATATCCGACCTTCGTGCTGTATGCGAATCGAGTACACAACATGCTCGGTCCAAGCTCCGATGGCGGGGCCGGTGAGTATCTTCGACCGAAGGGTCGTGGAAGACCGCAGAGGATTCTACTTGGCGTATGGCCGGACGAGCACATACGCGGTGTGATACGAACGGTTGTCTTTCGCGACGGTAACATCAAGGAGGAGCCAACACCGATTTATCCGAGCCTGACGAATTACGCGTGCAACGGTCCGGAGGGTGCGGTCAGTCCCGGTGCCGCAGCGGCAGCTGCGGTTGCCGCGGTCGCTCAAGGTCTGAGACATCAAATGTGCAGTATGGTCGCAGCGGCACAGTCTCACCAACACGACATGATGGCCACGAATCTCTCGGCGAACTTTCAAGCCGCCGTCCAAGTCAGTCAGCATCATCTGAACAACAATAGTCCAGCgagcaacaataacaacaacaataataataacaataacaacaacagcaacagtaACAACAGAAATTCGCCGCTAATGCTTGGATTGCCGAGTCCGGGCTCGGGAGGACCACCCGAGAGTCCTATGGAGGGAAGCCCGCTGGCGAGTCCCATGGCACCTTTGATGGATCCGGCTCACATACCGAGCAGTGTCGAGGTTGGCATCGGAGTGAGCGGTATGACTTACAAGCCGACGCGAAGTTTCATCAGTCCGAGGCCGGAGAATATGTTTCAGGAGGATATCGCCGATCTTGTGAAAAGCGCTCATACTCACAAGGACAAGGAAAAACTACCGGTGAAACTCGAACCACTCGCGGAATCGCGGAGCGAGCAgtaa
- Protein Sequence
- MQASSARGDLLREINEALAGTALRFKPEGPAKLLESSHAWLGASTSNISDSYQYQLQSLWQKCWNTNSGLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSSDGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRTVVFRDGNIKEEPTPIYPSLTNYACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAQSHQHDMMATNLSANFQAAVQVSQHHLNNNSPASNNNNNNNNNNNNNSNSNNRNSPLMLGLPSPGSGGPPESPMEGSPLASPMAPLMDPAHIPSSVEVGIGVSGMTYKPTRSFISPRPENMFQEDIADLVKSAHTHKDKEKLPVKLEPLAESRSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01207266;
- 90% Identity
- iTF_01057558;
- 80% Identity
- -