Oobs034356.1
Basic Information
- Insect
- Ophion obscuratus
- Gene Symbol
- bab1_1
- Assembly
- GCA_964007375.1
- Location
- OZ023323.1:17595158-17607665[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-17 2.7e-14 53.7 0.0 1 43 61 104 61 106 0.95 2 2 4.1 5.9e+03 -1.8 1.4 6 15 179 188 177 191 0.88
Sequence Information
- Coding Sequence
- ATGCGACACGTGACTAATCACCGTTATAACCCACCGCCTCTCTTTTTCTCCCGCGGTGGGACTGTTCCAGCAGACAGTTATCAGTATCAGCTTCAATCGCTCTGGCAAAAGTGTTGGAACACGAATTCGGGACTGGTGCACAATCTTCGATTTCGCGAACGGGGACCACTGAAGTCTTGGCGACCGGAGACCATGGCCGAAGCGATTTTCAGCGTACTCAAGGAGGGCCTCTCGCTCAGTCAGGCAGCCAGGAAGTACGACATCCCGTATCCGACCTTCGTACTTTACGCAAACCGAGTACACAACATGCTCGGTCCAAGCTCCGATGGAGGAGCCGATCTTCGGCCGAAGGGTCGTGGGAGGCCGCAGAGGATTCTACTTGGAGTTTGGCCCGATGAGCACATACGGGGCGTCATAAGGACCGTGGTGTTTCGCGACGGGAACATCAAGGAGGAACCGACGCCGATTTATCCGAGCTTGACGAATTACGCGTGCAACGGCCCCGAGGGCGCGGTCAGCCCCGGCGCCGCGGCGGCCGCTGCGGTCGCTGCGGTCGCTCAAGGTCTGCGTCATCAGATGTGCAGTATGGTGGCGGCCGCGCAGTCCCACCAGCACGACATGATAGCGACGAATCTATCGGCGAATTTCCAAGCGGCCGTTCAAGTAAGTCAGCATCATCTCAACAACAACAGTCCCGAGCGAACGAGTAGCGCCGGCGGCACCACCACCGCCAACACCAccaccaacaacaacaacaacaacaacaacaacagtaaCAGCAACAACAGGAATTCGCCGTTGATGCTGGGTCTGCCGAGTCCAGGCTCGGGTGGTGGTCCACCCGAGAGTCCAATCGAGGGCAGCCCCCTGGCTAGTCCTCTAGTCCCGCTAATGGATCCGGCACACATACCGAGCAGCGTTGAGGTCGGCATCGGTGTCAGCGGCATGACCTACAAACCTCCTCGGAGCTTCATCAGCCCCAGACCCGAGAATCTCTTTCAGGAGGACATCGCCGATCTCGTCAAGACCGCCCATTCGCACAAGGACAAGGACAAACTTCCGGTCAAACTCGAGCCTCTCTCCGAGTCCCGAAGCGAGCAGTAG
- Protein Sequence
- MRHVTNHRYNPPPLFFSRGGTVPADSYQYQLQSLWQKCWNTNSGLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSSDGGADLRPKGRGRPQRILLGVWPDEHIRGVIRTVVFRDGNIKEEPTPIYPSLTNYACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAQSHQHDMIATNLSANFQAAVQVSQHHLNNNSPERTSSAGGTTTANTTTNNNNNNNNNSNSNNRNSPLMLGLPSPGSGGGPPESPIEGSPLASPLVPLMDPAHIPSSVEVGIGVSGMTYKPPRSFISPRPENLFQEDIADLVKTAHSHKDKDKLPVKLEPLSESRSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01207266;
- 90% Identity
- iTF_01101238;
- 80% Identity
- -