Cido001589.2
Basic Information
- Insect
- Calameuta idolon
- Gene Symbol
- bab1
- Assembly
- GCA_030142285.1
- Location
- JARQSV010000099.1:474780-476889[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.9e-18 1e-14 54.0 0.0 1 43 28 71 28 73 0.95 2 3 1.3 1.4e+03 -0.8 0.9 6 15 153 162 150 165 0.86 3 3 7.3 7.6e+03 -3.2 0.1 3 11 192 200 192 200 0.82
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGTTGGAACACCAATCAGAGCCTGGTCCACAATCTGCGCTTCCGGGAACGCGGACCGCTCAAGTCTTGGCGACCGGAAACCATGGCCGAGGCAATCTTCAGCGTTCTAAAGGAAGGACTTTCGCTCAGCCAAGCAGCAAGGAAATACGACATACCGTACCCAACGTTTGTCCTTTACGCGAATCGAGTTCACAACATGTTAGGTCCAAGCGCCGATGGCGGGGCCGGTGAGTATCTACGTCCCAAGGGCCGAGGGCGACCTCAGCGAATACTCCTTGGGGTCTGGCCGGACGAGCACATCCGCGGTGTCATAAGGGCGGTTGTCTTCCGCGACGGACACTCGCCGCACATCGTCAAGGAGGAGCCAGCCTCCATGTATCCGAGTCTTGCGAATTACGCAGCCTGCAATGGACCGGAAGGAGCGGTGAGTCCCGGAACGGCAGCGGCAGCCGCGGTCGCGGCAGTGGCTCAAGGCCTCCGACATCAGATGTGCAGCATGGTGGCTGCTGCTCATTCCCACCAGCACGACATGATAGGTACGAATCTCTCCAGCAGCCTCTCGACGAACATCCAGGCGGCGATTCAGGCCCAGCATCatcacaacaacaacaacaacaacaataataataataacaatggtaaTTCGCCGCTCAATTTGGGCCTGGCGAGTCCCGGGTCGGGTGGTCCGCCCGAGAGTCCCATGGAGAGTCCCCTGGCGAGTCCTCTGGGTCCTCTGATGGATCCGACCCACATACCGAGCAGCGTGGAGGTCGGCATCGGTGTCAGCGGGATGACCTACAAGCCGGCGCGCAGCTTCGTCAGTCCCAGACCAGAGAATCTCTTCCAGGAGGACATCGCCGACCTCGTGAAGAGTTCTCATGGGCTCAAAGACAAGGACAAGATACCTGTGAAGTTGGAGCCGCTGACGGACTCGCGTTGCGAATAG
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPASMYPSLANYAACNGPEGAVSPGTAAAAAVAAVAQGLRHQMCSMVAAAHSHQHDMIGTNLSSSLSTNIQAAIQAQHHHNNNNNNNNNNNNGNSPLNLGLASPGSGGPPESPMESPLASPLGPLMDPTHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSSHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01207266;
- 90% Identity
- iTF_01395044; iTF_01475365; iTF_00294384; iTF_00295926; iTF_00291451; iTF_01473095; iTF_00292200; iTF_00293635; iTF_00254236; iTF_00251985; iTF_01474600; iTF_00296689; iTF_00298225; iTF_00295160; iTF_00297464; iTF_00292857; iTF_00159020; iTF_01537765; iTF_01130728; iTF_00770289; iTF_01198584; iTF_01199322; iTF_01473836; iTF_00252730; iTF_00254996;
- 80% Identity
- -