Lnyc005155.1
Basic Information
- Insect
- Listrodromus nycthemerus
- Gene Symbol
- bab1
- Assembly
- GCA_963978505.1
- Location
- OZ021681.1:17272404-17275465[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-16 5.7e-13 48.3 0.0 5 43 1 40 1 42 0.95 2 2 1.3 1.3e+03 -0.9 1.0 6 15 116 125 114 130 0.88
Sequence Information
- Coding Sequence
- ATGGCTGAAGCGATCTTCAGCGTTCTCAAGGAAGGGCTGTCTCTCAGTCAGGCTGCCAGAAAGTACGACATCCCTTATCCGACATTCGTGCTGTACGCGAATCGAGTGCACAACATGCTCGGGCCTAGCTCCGATGGCGGGGCCGATCTTCGACCAAAGGGTCGCGGCAGACCACAGAGGATTCTCCTGGGAGTGTGGCCGGACGAGCATATCCGGGGTGTAATTCGcgccgttgtttttcgcgacGGTCACATAGTCAAGGACGAGCAGACCCCAATCTATCCGAGCTTGGCGAATTACGCGTGCAACGGCCCGGAGGGTGCGGTGAGCCCCGGTgccgctgcggctgctgcGGTCGCCGCGGTCGCTCAAGGTCTTCGGCATCAAATGTGCAGCATGGTAGCAGCAGCCCAGTCACACCAGCACGACATGATAGCGACGAACCTGTCGGCGAACTTTCAAGCTGCCGTACAAGTCAGTCAGCATCATTTGAACAACAACAGTCCTGcgagcaacaacaacaacaacaacaataacaggAATTCACCATTGATACTCGGTCTACCGAGCCCTGGATCTGGTGGTCCACCGGAAAGTCCTATGGAGGGAAGTCCACTTGCGAGTCCGCTTGCGCCTTTGATGGATCCTGCCCACATACCGAGCAGTGTCGAGGTCGGTATCGGCGTCAGCGGATTGACCTACAAACCAACTCGCAGCTTCATCAGTCCGCGACCCGAAAATCTCTTCCAGGATGAAATTGCCGATCTCGTAAAAAGTCCTCACGGTCACAAGGACAAGGACAAAGTGCCGGTGAAACTCGAACCACTATCGGACTCGCGAAGCGAGCAGTAA
- Protein Sequence
- MAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSSDGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHIVKDEQTPIYPSLANYACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAQSHQHDMIATNLSANFQAAVQVSQHHLNNNSPASNNNNNNNNRNSPLILGLPSPGSGGPPESPMEGSPLASPLAPLMDPAHIPSSVEVGIGVSGLTYKPTRSFISPRPENLFQDEIADLVKSPHGHKDKDKVPVKLEPLSDSRSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01207266;
- 90% Identity
- iTF_01207266; iTF_00046051; iTF_00046876; iTF_01273700; iTF_00840971; iTF_00652603; iTF_00397193; iTF_00397981;
- 80% Identity
- -