Ntho016149.1
Basic Information
- Insect
- Netelia thomsonii
- Gene Symbol
- bab1
- Assembly
- GCA_964017225.1
- Location
- OZ024924.1:35370718-35378912[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-17 1.4e-14 53.6 0.0 1 43 94 137 94 139 0.95 2 2 6.1 3.1e+03 -1.9 1.4 6 15 214 223 212 226 0.88
Sequence Information
- Coding Sequence
- ATGAGTCGAGAGATTTTCGTATATATGCAAGCATCGAGTGCGAGAGAAGATCTCTTGAGGGAAATAAACGAAGCTCTCGCGAGAACTGCCTTACGGTTCAAACCCGAAGGACCGGCCAAGTTGTTGGAATCTTCCCACGCTTGGCTCGGCGCCTCCACCTCCAATATATCAGACAGCTATCAGTATCAACTTCAGTCGCTGTGGCAAAAATGCTGGAATACGAATTCGGGCCTGGTACACAATCTTCGATTTCGCGAAAGGGGACCTCTGAAATCGTGGCGGCCCGAGACAATGGCTGAAGCGATTTTTAGCGTTCTGAAGGAAGGACTTTCGCTGAGTCAGGCTGCCAGaAAATACGACATCCCATATCCGACTTTCGTGCTGTATGCCAATCGAGTACACAACATGCTCGGTCCAAGCTCCGATGGCGGGGCCGGTGAGTATCTTCGACCGAAGGGTCGTGGAAGACCGCAGAGGATTCTACTTGGCGTATGGCCGGACGAGCACATACGCGGTGTGATACGAACGGTTGTCTTTCGCGACGGTAACATCAAGGAGGAGCCAACACCGATTTATCCGAGCCTGACGAATTACGCGTGCAACGGTCCGGAGGGTGCGGTCAGTCCCGGTGCCGCAGCGGCAGCTGCGGTTGCCGCGGTCGCTCAAGgTCTTAGACATCAAATGTGCAGTATGGTGGCAGCGGCACAGTCCCATCAACACGACATGATGGCGACGAATCTCTCGGCGAACTTTCAAGCTGCCGTTCAAGTCAGTCAGCATCATCTGAACAACAATAGTCCAGCgagcaacaataacaacaacaataataacaataacaacaacagcaacagtaACAACAGAAATTCGCCGCTGATGCTTGGATTGCCGAGTCCGGGCTCGGGAGGACCACCCGAGAGTCCCATGGAGGGAAGCCCTCTGGCGAGTCCTATGGCACCTTTGATGGATCCGGCGCACATACCGAGTAGTGTCGAGGTTGGCATCGGGGTGAGCGGTATGACTTACAAGCCGACGCGAAGTTTCATCAGTCCGAGACCGGAGAATATGTTTCAGGAGGATATCGCCGATCTTGTGAAAAGCGCTCATGCTCACAAGGACAAGGAAAAGCTACCGGTGAAACTCGAGCCACTCGCGGAATCGCGGAGCGAGCAGTaa
- Protein Sequence
- MSREIFVYMQASSAREDLLREINEALARTALRFKPEGPAKLLESSHAWLGASTSNISDSYQYQLQSLWQKCWNTNSGLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSSDGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRTVVFRDGNIKEEPTPIYPSLTNYACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAQSHQHDMMATNLSANFQAAVQVSQHHLNNNSPASNNNNNNNNNNNNSNSNNRNSPLMLGLPSPGSGGPPESPMEGSPLASPMAPLMDPAHIPSSVEVGIGVSGMTYKPTRSFISPRPENMFQEDIADLVKSAHAHKDKEKLPVKLEPLAESRSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01207266;
- 90% Identity
- iTF_01129256;
- 80% Identity
- -