Csp004145.2
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- bab1
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000002.1:7282585-7287505[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-17 1.5e-14 53.8 0.0 1 43 59 102 59 104 0.95 2 2 2.6 2.8e+03 -1.5 1.1 6 15 180 189 178 193 0.89
Sequence Information
- Coding Sequence
- atgttTCAGGCCAAGTTATTGGAGTCTTCCCATGCTTGGCTCGGTGCCTCCACCTCCAATATATCAGACAGCTACCAGTATCAACTGCAATCATTATGGCAAAAATGCTGGAATACCAATTCTGGACTTGTTCATAATCTGCGCTTTCGTGAACGTGGACCATTGAAATCGTGGAGGCCTGAGACTATGGCTGAGGCGATTTTCAGTGTACTCAAGGAGGGTCTTTCATTGAGTCAAGCAGCGAGAAAATACGATATTCCATATCCAACATTCGTCTTATATGCAAATCGTGTGCACAATATGCTGGGACCGAGCTCCGATGGCGGGGCCGGTGAGTATCTACGGCCAAAAGGACGAGGAAGACCGCAGAGGATTCTCCTGGGTGTGTGGCCAGACGAGCACATCCGTGGTGTTATCAGAGCTGTTGTATTCCGTGACGGTTCCATCGTCAAGGACGAGCCAAATCCAATGTATCCAAGCCTAGCGAATTACGCGTGCAATGGTCCAGAGGGGGCGGTGAGCCCTGGTGCTGCTGCGGCTGCTGCGGTTGCCGCGGTCGCCCAAGGCCTTCGACATCAAATGTGTAGTATGGTAGCAGCCGCTCAATCCCATCAACACGACATGATAGCAACAAATCTCTCAGCAAACTTCCAAACAGCTGTTCAAGTTAGTCAGCATCATTTGAACAATAACAGTGGTTCGAGTAACAACaataatacaaataataataatcgtaATTCACCGTTGATACTTGGTCTACCAAGTCCTGGCTCGGGTGGACCACCAGAGAGTCCAATGGAGGGAAGTCCACTAGCAAGTCCCCTAGCACCACTTATGGATCCAGCCCACATCCCAAGTAGCGTTGAAGTTGGTATTGGTGTCAGTGGTATGACATACAAGCCCCAACGCAGCTACGTCAGTCCTAGGCCAGAGAATCTATTTCAAGAGGACATTTCTGATCTTGTCAAGAGTTCCCATGGACACAAGGACAAGGACAAAGTGCCAGTTAAACTTGAACCTTTGACTGATTCCAGGAGTGAGCAgtaa
- Protein Sequence
- MFQAKLLESSHAWLGASTSNISDSYQYQLQSLWQKCWNTNSGLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSSDGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGSIVKDEPNPMYPSLANYACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAQSHQHDMIATNLSANFQTAVQVSQHHLNNNSGSSNNNNTNNNNRNSPLILGLPSPGSGGPPESPMEGSPLASPLAPLMDPAHIPSSVEVGIGVSGMTYKPQRSYVSPRPENLFQEDISDLVKSSHGHKDKDKVPVKLEPLTDSRSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01207266;
- 90% Identity
- iTF_01129256;
- 80% Identity
- -